Added a preliminary version of rename detection

JGit does not currently do rename detection during diffs. I added
a class that, given a TreeWalk to iterate over, can output a list
of DiffEntry's for that TreeWalk, taking into account renames. This
class only detects renames by SHA1's. More complex rename detection,
along the lines of what C Git does will be added later.

Change-Id: I93606ce15da70df6660651ec322ea50718dd7c04
diff --git a/org.eclipse.jgit.test/tst/org/eclipse/jgit/diff/RenameDetectorTest.java b/org.eclipse.jgit.test/tst/org/eclipse/jgit/diff/RenameDetectorTest.java
new file mode 100644
index 0000000..4f84066
--- /dev/null
+++ b/org.eclipse.jgit.test/tst/org/eclipse/jgit/diff/RenameDetectorTest.java
@@ -0,0 +1,204 @@
+/*
+ * Copyright (C) 2010, Google Inc.
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+
+package org.eclipse.jgit.diff;
+
+import java.util.List;
+
+import org.eclipse.jgit.diff.DiffEntry.ChangeType;
+import org.eclipse.jgit.junit.TestRepository;
+import org.eclipse.jgit.lib.AbbreviatedObjectId;
+import org.eclipse.jgit.lib.FileMode;
+import org.eclipse.jgit.lib.ObjectId;
+import org.eclipse.jgit.lib.RepositoryTestCase;
+
+public class RenameDetectorTest extends RepositoryTestCase {
+
+	RenameDetector rd;
+
+	TestRepository testDb;
+
+	@Override
+	public void setUp() throws Exception {
+		super.setUp();
+		testDb = new TestRepository(db);
+		rd = new RenameDetector();
+	}
+
+	public void testGetEntriesAddDelete() throws Exception {
+		ObjectId foo = testDb.blob("foo").copy();
+
+		DiffEntry a = new DiffEntry();
+		a.newId = AbbreviatedObjectId.fromObjectId(foo);
+		a.newMode = FileMode.REGULAR_FILE;
+		a.newName = "some/file.c";
+		a.changeType = ChangeType.ADD;
+
+		DiffEntry b = new DiffEntry();
+		b.oldId = AbbreviatedObjectId.fromObjectId(foo);
+		b.oldMode = FileMode.REGULAR_FILE;
+		b.oldName = "some/other_file.c";
+		b.changeType = ChangeType.DELETE;
+
+		rd.addDiffEntry(a);
+		rd.addDiffEntry(b);
+
+		List<DiffEntry> entries = rd.getEntries();
+		assertEquals(1, entries.size());
+
+		DiffEntry rename = entries.get(0);
+		assertNotNull(rename);
+		assertTrue(foo.equals(rename.newId.toObjectId()));
+		assertTrue(foo.equals(rename.oldId.toObjectId()));
+		assertEquals(FileMode.REGULAR_FILE, rename.newMode);
+		assertEquals(FileMode.REGULAR_FILE, rename.oldMode);
+		assertEquals(ChangeType.RENAME, rename.changeType);
+		assertEquals("some/file.c", rename.newName);
+		assertEquals("some/other_file.c", rename.oldName);
+	}
+
+	public void testGetEntriesAddDeleteModify() throws Exception {
+		ObjectId foo = testDb.blob("foo").copy();
+		ObjectId bar = testDb.blob("bar").copy();
+
+		DiffEntry a = new DiffEntry();
+		a.newId = AbbreviatedObjectId.fromObjectId(foo);
+		a.newMode = FileMode.REGULAR_FILE;
+		a.newName = "some/file.c";
+		a.changeType = ChangeType.ADD;
+
+		DiffEntry b = new DiffEntry();
+		b.oldId = AbbreviatedObjectId.fromObjectId(foo);
+		b.oldMode = FileMode.REGULAR_FILE;
+		b.oldName = "some/other_file.c";
+		b.changeType = ChangeType.DELETE;
+
+		DiffEntry c = new DiffEntry();
+		c.newId = c.oldId = AbbreviatedObjectId.fromObjectId(bar);
+		c.newMode = c.oldMode = FileMode.REGULAR_FILE;
+		c.newName = c.oldName = "some/header.h";
+		c.changeType = ChangeType.MODIFY;
+
+		rd.addDiffEntry(a);
+		rd.addDiffEntry(b);
+		rd.addDiffEntry(c);
+
+		List<DiffEntry> entries = rd.getEntries();
+		assertEquals(2, entries.size());
+
+		// The renamed change should be first because the output should be
+		// sorted by newName
+		DiffEntry rename = entries.get(0);
+		assertNotNull(rename);
+		assertTrue(foo.equals(rename.newId.toObjectId()));
+		assertTrue(foo.equals(rename.oldId.toObjectId()));
+		assertEquals(FileMode.REGULAR_FILE, rename.newMode);
+		assertEquals(FileMode.REGULAR_FILE, rename.oldMode);
+		assertEquals(ChangeType.RENAME, rename.changeType);
+		assertEquals("some/file.c", rename.newName);
+		assertEquals("some/other_file.c", rename.oldName);
+
+		DiffEntry modify = entries.get(1);
+		assertEquals(c, modify);
+	}
+
+	public void testGetEntriesMultipleRenames() throws Exception {
+		ObjectId foo = testDb.blob("foo").copy();
+		ObjectId bar = testDb.blob("bar").copy();
+
+		DiffEntry a = new DiffEntry();
+		a.newId = AbbreviatedObjectId.fromObjectId(foo);
+		a.newMode = FileMode.REGULAR_FILE;
+		a.newName = "some/file.c";
+		a.changeType = ChangeType.ADD;
+
+		DiffEntry b = new DiffEntry();
+		b.oldId = AbbreviatedObjectId.fromObjectId(foo);
+		b.oldMode = FileMode.REGULAR_FILE;
+		b.oldName = "some/other_file.c";
+		b.changeType = ChangeType.DELETE;
+
+		DiffEntry c = new DiffEntry();
+		c.newId = AbbreviatedObjectId.fromObjectId(bar);
+		c.newMode = FileMode.REGULAR_FILE;
+		c.newName = "README";
+		c.changeType = ChangeType.ADD;
+
+		DiffEntry d = new DiffEntry();
+		d.oldId = AbbreviatedObjectId.fromObjectId(bar);
+		d.oldMode = FileMode.REGULAR_FILE;
+		d.oldName = "REEDME";
+		d.changeType = ChangeType.DELETE;
+
+		rd.addDiffEntry(a);
+		rd.addDiffEntry(b);
+		rd.addDiffEntry(c);
+		rd.addDiffEntry(d);
+
+		List<DiffEntry> entries = rd.getEntries();
+		assertEquals(2, entries.size());
+
+		// The REEDME -> README renamed change should be first because the
+		// output should be sorted by newName
+		DiffEntry readme = entries.get(0);
+		assertNotNull(readme);
+		assertTrue(bar.equals(readme.newId.toObjectId()));
+		assertTrue(bar.equals(readme.oldId.toObjectId()));
+		assertEquals(FileMode.REGULAR_FILE, readme.newMode);
+		assertEquals(FileMode.REGULAR_FILE, readme.oldMode);
+		assertEquals(ChangeType.RENAME, readme.changeType);
+		assertEquals("README", readme.newName);
+		assertEquals("REEDME", readme.oldName);
+
+		DiffEntry somefile = entries.get(1);
+		assertNotNull(somefile);
+		assertTrue(foo.equals(somefile.newId.toObjectId()));
+		assertTrue(foo.equals(somefile.oldId.toObjectId()));
+		assertEquals(FileMode.REGULAR_FILE, somefile.newMode);
+		assertEquals(FileMode.REGULAR_FILE, somefile.oldMode);
+		assertEquals(ChangeType.RENAME, somefile.changeType);
+		assertEquals("some/file.c", somefile.newName);
+		assertEquals("some/other_file.c", somefile.oldName);
+	}
+
+}
diff --git a/org.eclipse.jgit/resources/org/eclipse/jgit/JGitText.properties b/org.eclipse.jgit/resources/org/eclipse/jgit/JGitText.properties
index 91b67da..76097cb 100644
--- a/org.eclipse.jgit/resources/org/eclipse/jgit/JGitText.properties
+++ b/org.eclipse.jgit/resources/org/eclipse/jgit/JGitText.properties
@@ -297,6 +297,7 @@
 remoteDoesNotSupportSmartHTTPPush=remote does not support smart HTTP push
 remoteHungUpUnexpectedly=remote hung up unexpectedly
 remoteNameCantBeNull=Remote name can't be null.
+renamesAlreadyFound=Renames have already been found.
 repositoryAlreadyExists=Repository already exists: {0}
 repositoryNotFound=repository not found: {0}
 requiredHashFunctionNotAvailable=Required hash function {0} not available.
diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/JGitText.java b/org.eclipse.jgit/src/org/eclipse/jgit/JGitText.java
index 0c64b9e..a2e1cd1 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/JGitText.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/JGitText.java
@@ -356,6 +356,7 @@ public static JGitText get() {
 	/***/ public String remoteDoesNotSupportSmartHTTPPush;
 	/***/ public String remoteHungUpUnexpectedly;
 	/***/ public String remoteNameCantBeNull;
+	/***/ public String renamesAlreadyFound;
 	/***/ public String repositoryAlreadyExists;
 	/***/ public String repositoryNotFound;
 	/***/ public String requiredHashFunctionNotAvailable;
diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/diff/RenameDetector.java b/org.eclipse.jgit/src/org/eclipse/jgit/diff/RenameDetector.java
new file mode 100644
index 0000000..50d81c9
--- /dev/null
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/diff/RenameDetector.java
@@ -0,0 +1,258 @@
+/*
+ * Copyright (C) 2010, Google Inc.
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+
+package org.eclipse.jgit.diff;
+
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.Collections;
+import java.util.Comparator;
+import java.util.HashMap;
+import java.util.List;
+
+import org.eclipse.jgit.JGitText;
+import org.eclipse.jgit.diff.DiffEntry.ChangeType;
+import org.eclipse.jgit.errors.CorruptObjectException;
+import org.eclipse.jgit.errors.IncorrectObjectTypeException;
+import org.eclipse.jgit.errors.MissingObjectException;
+import org.eclipse.jgit.lib.AbbreviatedObjectId;
+import org.eclipse.jgit.lib.FileMode;
+import org.eclipse.jgit.lib.MutableObjectId;
+import org.eclipse.jgit.treewalk.TreeWalk;
+
+/** Detect and resolve object renames. */
+public class RenameDetector {
+
+	private static final int EXACT_RENAME_SCORE = 100;
+
+	private static final Comparator<DiffEntry> DIFF_COMPARATOR = new Comparator<DiffEntry>() {
+		public int compare(DiffEntry o1, DiffEntry o2) {
+			return o1.newName.compareTo(o2.newName);
+		}
+	};
+
+	private final List<DiffEntry> entries = new ArrayList<DiffEntry>();
+
+	private List<DiffEntry> deleted = new ArrayList<DiffEntry>();
+
+	private List<DiffEntry> added = new ArrayList<DiffEntry>();
+
+	private boolean done = false;
+
+	/**
+	 * Walk through a given tree walk with exactly two trees and add all
+	 * differing files to the list of object to run rename detection on.
+	 * <p>
+	 * The tree walk must have two trees attached to it, as well as a filter.
+	 * Calling this method after calling {@link #getEntries()} will result in an
+	 * {@link IllegalStateException}.
+	 *
+	 * @param walk
+	 *            the TreeWalk to walk through. Must have exactly two trees.
+	 * @throws IllegalStateException
+	 *             the {@link #getEntries()} method has already been called for
+	 *             this instance.
+	 * @throws MissingObjectException
+	 *             {@link TreeWalk#isRecursive()} was enabled on the tree, a
+	 *             subtree was found, but the subtree object does not exist in
+	 *             this repository. The repository may be missing objects.
+	 * @throws IncorrectObjectTypeException
+	 *             {@link TreeWalk#isRecursive()} was enabled on the tree, a
+	 *             subtree was found, and the subtree id does not denote a tree,
+	 *             but instead names some other non-tree type of object. The
+	 *             repository may have data corruption.
+	 * @throws CorruptObjectException
+	 *             the contents of a tree did not appear to be a tree. The
+	 *             repository may have data corruption.
+	 * @throws IOException
+	 *             a loose object or pack file could not be read.
+	 */
+	public void addTreeWalk(TreeWalk walk) throws MissingObjectException,
+			IncorrectObjectTypeException, CorruptObjectException, IOException {
+		if (done)
+			throw new IllegalStateException(JGitText.get().renamesAlreadyFound);
+		MutableObjectId idBuf = new MutableObjectId();
+		while (walk.next()) {
+			DiffEntry entry = new DiffEntry();
+			walk.getObjectId(idBuf, 0);
+			entry.oldId = AbbreviatedObjectId.fromObjectId(idBuf);
+			walk.getObjectId(idBuf, 1);
+			entry.newId = AbbreviatedObjectId.fromObjectId(idBuf);
+			entry.oldMode = walk.getFileMode(0);
+			entry.newMode = walk.getFileMode(1);
+			entry.newName = entry.oldName = walk.getPathString();
+			if (entry.oldMode == FileMode.MISSING) {
+				entry.changeType = ChangeType.ADD;
+				added.add(entry);
+			} else if (entry.newMode == FileMode.MISSING) {
+				entry.changeType = ChangeType.DELETE;
+				deleted.add(entry);
+			} else {
+				entry.changeType = ChangeType.MODIFY;
+				entries.add(entry);
+			}
+		}
+	}
+
+	/**
+	 * Add a DiffEntry to the list of items to run rename detection on. Calling
+	 * this method after calling {@link #getEntries()} will result in an
+	 * {@link IllegalStateException}.
+	 *
+	 * @param entry
+	 *            the {@link DiffEntry} to add
+	 *
+	 * @throws IllegalStateException
+	 *             the {@link #getEntries()} method has already been called for
+	 *             this instance
+	 */
+	public void addDiffEntry(DiffEntry entry) {
+		if (done)
+			throw new IllegalStateException(JGitText.get().renamesAlreadyFound);
+		switch (entry.changeType) {
+		case ADD:
+			added.add(entry);
+			break;
+		case DELETE:
+			deleted.add(entry);
+			break;
+		case COPY:
+		case MODIFY:
+		case RENAME:
+		default:
+			entries.add(entry);
+		}
+	}
+
+	/**
+	 * Determines which files, if any, are renames, and returns an unmodifiable
+	 * list of {@link DiffEntry}s representing all files that have been changed
+	 * in some way. The list will contain all modified files first
+	 *
+	 * @return an unmodifiable list of {@link DiffEntry}s representing all files
+	 *         that have been changed
+	 * @throws IOException
+	 */
+	public List<DiffEntry> getEntries() throws IOException {
+		if (!done) {
+			done = true;
+			findExactRenames();
+			entries.addAll(added);
+			entries.addAll(deleted);
+			added = null;
+			deleted = null;
+			Collections.sort(entries, DIFF_COMPARATOR);
+		}
+		return Collections.unmodifiableList(entries);
+	}
+
+	@SuppressWarnings("unchecked")
+	private void findExactRenames() {
+		HashMap<AbbreviatedObjectId, Object> map = new HashMap<AbbreviatedObjectId, Object>();
+
+		for (DiffEntry del : deleted) {
+			Object old = map.put(del.oldId, del);
+			if (old != null) {
+				if (old instanceof DiffEntry) {
+					ArrayList<DiffEntry> tmp = new ArrayList<DiffEntry>(2);
+					tmp.add((DiffEntry) old);
+					tmp.add(del);
+					map.put(del.oldId, tmp);
+				} else {
+					// Must be a list of DiffEntrys
+					((List) old).add(del);
+					map.put(del.oldId, old);
+				}
+			}
+		}
+
+		ArrayList<DiffEntry> tempAdded = new ArrayList<DiffEntry>(added.size());
+
+		for (DiffEntry add : added) {
+			Object del = map.remove(add.newId);
+			if (del != null) {
+				if (del instanceof DiffEntry) {
+					entries.add(resolveRename(add, (DiffEntry) del,
+							EXACT_RENAME_SCORE));
+				} else {
+					// Must be a list of DiffEntrys
+					List<DiffEntry> tmp = (List<DiffEntry>) del;
+					entries.add(resolveRename(add, tmp.remove(0),
+							EXACT_RENAME_SCORE));
+					if (!tmp.isEmpty())
+						map.put(add.newId, del);
+				}
+			} else {
+				tempAdded.add(add);
+			}
+		}
+		added = tempAdded;
+
+		Collection<Object> values = map.values();
+		ArrayList<DiffEntry> tempDeleted = new ArrayList<DiffEntry>(values
+				.size());
+		for (Object o : values) {
+			if (o instanceof DiffEntry)
+				tempDeleted.add((DiffEntry) o);
+			else
+				tempDeleted.addAll((List<DiffEntry>) o);
+		}
+		deleted = tempDeleted;
+	}
+
+	private DiffEntry resolveRename(DiffEntry add, DiffEntry del, int score) {
+		DiffEntry renamed = new DiffEntry();
+
+		renamed.oldId = del.oldId;
+		renamed.oldMode = del.oldMode;
+		renamed.oldName = del.oldName;
+		renamed.newId = add.newId;
+		renamed.newMode = add.newMode;
+		renamed.newName = add.newName;
+		renamed.changeType = ChangeType.RENAME;
+		renamed.score = score;
+
+		return renamed;
+	}
+}
diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/lib/AbbreviatedObjectId.java b/org.eclipse.jgit/src/org/eclipse/jgit/lib/AbbreviatedObjectId.java
index a150e8f..3f188fe 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/lib/AbbreviatedObjectId.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/lib/AbbreviatedObjectId.java
@@ -83,6 +83,21 @@ public static final AbbreviatedObjectId fromString(final byte[] buf,
 	}
 
 	/**
+	 * Convert an AbbreviatedObjectId from an {@link AnyObjectId}.
+	 * <p>
+	 * This method copies over all bits of the Id, and is therefore complete
+	 * (see {@link #isComplete()}).
+	 *
+	 * @param id
+	 *            the {@link ObjectId} to convert from.
+	 * @return the converted object id.
+	 */
+	public static final AbbreviatedObjectId fromObjectId(AnyObjectId id) {
+		return new AbbreviatedObjectId(Constants.OBJECT_ID_STRING_LENGTH,
+				id.w1, id.w2, id.w3, id.w4, id.w5);
+	}
+
+	/**
 	 * Convert an AbbreviatedObjectId from hex characters.
 	 *
 	 * @param str