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gerrit/jgit/8f6b75f7ade43c44fcfec5a02cca50439f365f19^2..8f6b75f7ade43c44fcfec5a02cca50439f365f19/.
commit
8f6b75f7ade43c44fcfec5a02cca50439f365f19
[log]
author
Matthias Sohn <matthias.sohn@sap.com>
Tue Oct 11 00:34:42 2016 +0200
committer
Matthias Sohn <matthias.sohn@sap.com>
Tue Oct 11 00:34:55 2016 +0200
tree
37cf9631b2821bbca232e1b8607f68d5cf38f2fe
parent
26832a00e4f6cfbc3b0319e08665755d54ce3689 [diff]
parent
15341ce5777c25dd41a52cf4b633ba363e3bf7a2 [diff]
Merge branch 'stable-4.5'

* stable-4.5:
  pgm: Fix misspelled key of an externalized string
  Add missing online help for Ketch server type option in CLI daemon
  Remove wrong junit dependencies in org.eclipse.jgit.pgm

Change-Id: I9cac024c0b488101b539c713b0f5ffc8c01b55bd
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

diff --git a/.buckconfig b/.buckconfig
index 8d2572b..7986494 100644
--- a/.buckconfig
+++ b/.buckconfig

@@ -12,6 +12,8 @@
 
 [java]
   src_roots = src, resources, tst
+  source_level = 8
+  target_level = 8
 
 [project]
   ignore = .git

diff --git a/org.eclipse.jgit.ant.test/.classpath b/org.eclipse.jgit.ant.test/.classpath
index 098194c..eca7bdb 100644
--- a/org.eclipse.jgit.ant.test/.classpath
+++ b/org.eclipse.jgit.ant.test/.classpath

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="output" path="bin"/>

diff --git a/org.eclipse.jgit.ant.test/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.ant.test/.settings/org.eclipse.jdt.core.prefs
index 87210fb..10c29d5 100644
--- a/org.eclipse.jgit.ant.test/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.ant.test/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.ant.test/META-INF/MANIFEST.MF b/org.eclipse.jgit.ant.test/META-INF/MANIFEST.MF
index ef8ed89..29526a8 100644
--- a/org.eclipse.jgit.ant.test/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.ant.test/META-INF/MANIFEST.MF

@@ -3,14 +3,14 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.ant.test
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-ActivationPolicy: lazy
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Import-Package: org.apache.tools.ant,
- org.eclipse.jgit.ant.tasks;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.junit;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)",
+ org.eclipse.jgit.ant.tasks;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.junit;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)",
  org.hamcrest;version="[1.1.0,2.0.0)",
  org.junit;version="[4.0.0,5.0.0)"

diff --git a/org.eclipse.jgit.ant.test/build.properties b/org.eclipse.jgit.ant.test/build.properties
index e3effea..4a2d892 100644
--- a/org.eclipse.jgit.ant.test/build.properties
+++ b/org.eclipse.jgit.ant.test/build.properties

@@ -3,5 +3,5 @@
 bin.includes = plugin.properties,\
 			   META-INF/,\
 			   .
-jre.compilation.profile = JavaSE-1.7
+jre.compilation.profile = JavaSE-1.8
 additional.bundles = org.eclipse.jgit

diff --git a/org.eclipse.jgit.ant.test/pom.xml b/org.eclipse.jgit.ant.test/pom.xml
index b375749..6afdfe9 100644
--- a/org.eclipse.jgit.ant.test/pom.xml
+++ b/org.eclipse.jgit.ant.test/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.ant.test</artifactId>

diff --git a/org.eclipse.jgit.ant/.classpath b/org.eclipse.jgit.ant/.classpath
index a14ade4..110168f 100644
--- a/org.eclipse.jgit.ant/.classpath
+++ b/org.eclipse.jgit.ant/.classpath

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="src" path="resources"/>

diff --git a/org.eclipse.jgit.ant/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.ant/.settings/org.eclipse.jdt.core.prefs
index cd620c3..80cfbbb 100644
--- a/org.eclipse.jgit.ant/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.ant/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.ant/META-INF/MANIFEST.MF b/org.eclipse.jgit.ant/META-INF/MANIFEST.MF
index 88e13b7..26e4cc3 100644
--- a/org.eclipse.jgit.ant/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.ant/META-INF/MANIFEST.MF

@@ -2,11 +2,11 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %Bundle-Name
 Bundle-SymbolicName: org.eclipse.jgit.ant
-Bundle-Version: 4.5.1.qualifier
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
+Bundle-Version: 4.6.0.qualifier
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Import-Package: org.apache.tools.ant,
-  org.eclipse.jgit.storage.file;version="[4.5.1,4.6.0)"
+  org.eclipse.jgit.storage.file;version="[4.6.0,4.7.0)"
 Bundle-Localization: plugin
 Bundle-Vendor: %Provider-Name
-Export-Package: org.eclipse.jgit.ant.tasks;version="4.5.1";
+Export-Package: org.eclipse.jgit.ant.tasks;version="4.6.0";
  uses:="org.apache.tools.ant.types,org.apache.tools.ant"

diff --git a/org.eclipse.jgit.ant/pom.xml b/org.eclipse.jgit.ant/pom.xml
index ac3e3d1..01f0d42 100644
--- a/org.eclipse.jgit.ant/pom.xml
+++ b/org.eclipse.jgit.ant/pom.xml

@@ -48,7 +48,7 @@
 	<parent>
 		<groupId>org.eclipse.jgit</groupId>
 		<artifactId>org.eclipse.jgit-parent</artifactId>
-		<version>4.5.1-SNAPSHOT</version>
+		<version>4.6.0-SNAPSHOT</version>
 	</parent>
 
 	<artifactId>org.eclipse.jgit.ant</artifactId>

diff --git a/org.eclipse.jgit.archive/.classpath b/org.eclipse.jgit.archive/.classpath
index 3bc2475..22f3064 100644
--- a/org.eclipse.jgit.archive/.classpath
+++ b/org.eclipse.jgit.archive/.classpath

@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
 	<classpathentry kind="src" path="src"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="output" path="bin"/>
 </classpath>

diff --git a/org.eclipse.jgit.archive/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.archive/.settings/org.eclipse.jdt.core.prefs
index bfaf736..4f1759f 100644
--- a/org.eclipse.jgit.archive/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.archive/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=enabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.archive/META-INF/MANIFEST.MF b/org.eclipse.jgit.archive/META-INF/MANIFEST.MF
index 1411978..0ae961c 100644
--- a/org.eclipse.jgit.archive/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.archive/META-INF/MANIFEST.MF

@@ -2,24 +2,24 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.archive
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Vendor: %provider_name
 Bundle-Localization: plugin
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Import-Package: org.apache.commons.compress.archivers;version="[1.4,2.0)",
  org.apache.commons.compress.archivers.tar;version="[1.4,2.0)",
  org.apache.commons.compress.archivers.zip;version="[1.4,2.0)",
  org.apache.commons.compress.compressors.bzip2;version="[1.4,2.0)",
  org.apache.commons.compress.compressors.gzip;version="[1.4,2.0)",
  org.apache.commons.compress.compressors.xz;version="[1.4,2.0)",
- org.eclipse.jgit.api;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.nls;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)",
+ org.eclipse.jgit.api;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.nls;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)",
  org.osgi.framework;version="[1.3.0,2.0.0)"
 Bundle-ActivationPolicy: lazy
 Bundle-Activator: org.eclipse.jgit.archive.FormatActivator
-Export-Package: org.eclipse.jgit.archive;version="4.5.1";
+Export-Package: org.eclipse.jgit.archive;version="4.6.0";
   uses:="org.eclipse.jgit.lib,
    org.eclipse.jgit.api,
    org.apache.commons.compress.archivers,

diff --git a/org.eclipse.jgit.archive/META-INF/SOURCE-MANIFEST.MF b/org.eclipse.jgit.archive/META-INF/SOURCE-MANIFEST.MF
index 43ed6c6..a5a6005 100644
--- a/org.eclipse.jgit.archive/META-INF/SOURCE-MANIFEST.MF
+++ b/org.eclipse.jgit.archive/META-INF/SOURCE-MANIFEST.MF

@@ -3,5 +3,5 @@
 Bundle-Name: org.eclipse.jgit.archive - Sources
 Bundle-SymbolicName: org.eclipse.jgit.archive.source
 Bundle-Vendor: Eclipse.org - JGit
-Bundle-Version: 4.5.1.qualifier
-Eclipse-SourceBundle: org.eclipse.jgit.archive;version="4.5.1.qualifier";roots="."
+Bundle-Version: 4.6.0.qualifier
+Eclipse-SourceBundle: org.eclipse.jgit.archive;version="4.6.0.qualifier";roots="."

diff --git a/org.eclipse.jgit.archive/pom.xml b/org.eclipse.jgit.archive/pom.xml
index 12115df..1d5610f 100644
--- a/org.eclipse.jgit.archive/pom.xml
+++ b/org.eclipse.jgit.archive/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.archive</artifactId>

diff --git a/org.eclipse.jgit.http.apache/.classpath b/org.eclipse.jgit.http.apache/.classpath
index a14ade4..110168f 100644
--- a/org.eclipse.jgit.http.apache/.classpath
+++ b/org.eclipse.jgit.http.apache/.classpath

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="src" path="resources"/>

diff --git a/org.eclipse.jgit.http.apache/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.http.apache/.settings/org.eclipse.jdt.core.prefs
index cd620c3..80cfbbb 100644
--- a/org.eclipse.jgit.http.apache/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.http.apache/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.http.apache/META-INF/MANIFEST.MF b/org.eclipse.jgit.http.apache/META-INF/MANIFEST.MF
index 48cf4ac..1b4d4b1 100644
--- a/org.eclipse.jgit.http.apache/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.http.apache/META-INF/MANIFEST.MF

@@ -2,30 +2,36 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %Bundle-Name
 Bundle-SymbolicName: org.eclipse.jgit.http.apache
-Bundle-Version: 4.5.1.qualifier
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
+Bundle-Version: 4.6.0.qualifier
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Bundle-Localization: plugin
 Bundle-Vendor: %Provider-Name
 Bundle-ActivationPolicy: lazy
-Import-Package: org.apache.http;version="[4.1.0,5.0.0)",
- org.apache.http.client;version="[4.1.0,5.0.0)",
- org.apache.http.client.methods;version="[4.1.0,5.0.0)",
- org.apache.http.client.params;version="[4.1.0,5.0.0)",
- org.apache.http.conn;version="[4.1.0,5.0.0)",
- org.apache.http.conn.params;version="[4.1.0,5.0.0)",
- org.apache.http.conn.scheme;version="[4.1.0,5.0.0)",
- org.apache.http.conn.ssl;version="[4.1.0,5.0.0)",
- org.apache.http.entity;version="[4.1.0,5.0.0)",
- org.apache.http.impl.client;version="[4.1.0,5.0.0)",
- org.apache.http.impl.client.cache;version="[4.1.0,5.0.0)",
- org.apache.http.params;version="[4.1.0,5.0.0)",
- org.eclipse.jgit.nls;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport.http;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)"
-Export-Package: org.eclipse.jgit.transport.http.apache;version="4.5.1";
-  uses:="org.eclipse.jgit.transport.http,
-   javax.net.ssl,
-   org.apache.http.client,
+Import-Package: org.apache.http;version="[4.3.0,5.0.0)",
+ org.apache.http.client;version="[4.3.0,5.0.0)",
+ org.apache.http.client.config;version="[4.3.0,5.0.0)",
+ org.apache.http.client.methods;version="[4.3.0,5.0.0)",
+ org.apache.http.client.params;version="[4.3.0,5.0.0)",
+ org.apache.http.config;version="[4.3.0,5.0.0)",
+ org.apache.http.conn;version="[4.3.0,5.0.0)",
+ org.apache.http.conn.params;version="[4.3.0,5.0.0)",
+ org.apache.http.conn.scheme;version="[4.3.0,5.0.0)",
+ org.apache.http.conn.socket;version="[4.3.0,5.0.0)",
+ org.apache.http.conn.ssl;version="[4.3.0,5.0.0)",
+ org.apache.http.entity;version="[4.3.0,5.0.0)",
+ org.apache.http.impl.client;version="[4.3.0,5.0.0)",
+ org.apache.http.impl.client.cache;version="[4.3.0,5.0.0)",
+ org.apache.http.impl.conn;version="[4.3.0,5.0.0)",
+ org.apache.http.params;version="[4.3.0,5.0.0)",
+ org.eclipse.jgit.nls;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport.http;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)"
+Export-Package: org.eclipse.jgit.transport.http.apache;version="4.6.0";
+  uses:="org.apache.http.client,
+   org.eclipse.jgit.transport.http,
+   org.apache.http.entity,
    org.apache.http.client.methods,
+   javax.net.ssl,
+   org.eclipse.jgit.util,
    org.apache.http",
  org.eclipse.jgit.transport.http.apache.internal;x-internal:=true

diff --git a/org.eclipse.jgit.http.apache/pom.xml b/org.eclipse.jgit.http.apache/pom.xml
index 8ad915f..e5c9ab3 100644
--- a/org.eclipse.jgit.http.apache/pom.xml
+++ b/org.eclipse.jgit.http.apache/pom.xml

@@ -48,7 +48,7 @@
 	<parent>
 		<groupId>org.eclipse.jgit</groupId>
 		<artifactId>org.eclipse.jgit-parent</artifactId>
-		<version>4.5.1-SNAPSHOT</version>
+		<version>4.6.0-SNAPSHOT</version>
 	</parent>
 
 	<artifactId>org.eclipse.jgit.http.apache</artifactId>

diff --git a/org.eclipse.jgit.http.apache/src/org/eclipse/jgit/transport/http/apache/HttpClientConnection.java b/org.eclipse.jgit.http.apache/src/org/eclipse/jgit/transport/http/apache/HttpClientConnection.java
index 2d9d17a..6543bf6 100644
--- a/org.eclipse.jgit.http.apache/src/org/eclipse/jgit/transport/http/apache/HttpClientConnection.java
+++ b/org.eclipse.jgit.http.apache/src/org/eclipse/jgit/transport/http/apache/HttpClientConnection.java

@@ -80,19 +80,20 @@
 import org.apache.http.HttpResponse;
 import org.apache.http.client.ClientProtocolException;
 import org.apache.http.client.HttpClient;
+import org.apache.http.client.config.RequestConfig;
 import org.apache.http.client.methods.HttpGet;
 import org.apache.http.client.methods.HttpHead;
 import org.apache.http.client.methods.HttpPost;
 import org.apache.http.client.methods.HttpPut;
 import org.apache.http.client.methods.HttpUriRequest;
-import org.apache.http.client.params.ClientPNames;
-import org.apache.http.conn.params.ConnRoutePNames;
-import org.apache.http.conn.scheme.Scheme;
-import org.apache.http.conn.ssl.SSLSocketFactory;
+import org.apache.http.config.Registry;
+import org.apache.http.config.RegistryBuilder;
+import org.apache.http.conn.socket.ConnectionSocketFactory;
+import org.apache.http.conn.ssl.SSLConnectionSocketFactory;
 import org.apache.http.conn.ssl.X509HostnameVerifier;
-import org.apache.http.impl.client.DefaultHttpClient;
-import org.apache.http.params.CoreConnectionPNames;
-import org.apache.http.params.HttpParams;
+import org.apache.http.impl.client.HttpClientBuilder;
+import org.apache.http.impl.client.HttpClients;
+import org.apache.http.impl.conn.BasicHttpClientConnectionManager;
 import org.eclipse.jgit.transport.http.HttpConnection;
 import org.eclipse.jgit.transport.http.apache.internal.HttpApacheText;
 import org.eclipse.jgit.util.TemporaryBuffer;
@@ -131,29 +132,37 @@ public class HttpClientConnection implements HttpConnection {
 	SSLContext ctx;
 
 	private HttpClient getClient() {
-		if (client == null)
-			client = new DefaultHttpClient();
-		HttpParams params = client.getParams();
-		if (proxy != null && !Proxy.NO_PROXY.equals(proxy)) {
-			isUsingProxy = true;
-			InetSocketAddress adr = (InetSocketAddress) proxy.address();
-			params.setParameter(ConnRoutePNames.DEFAULT_PROXY,
-					new HttpHost(adr.getHostName(), adr.getPort()));
-		}
-		if (timeout != null)
-			params.setIntParameter(CoreConnectionPNames.CONNECTION_TIMEOUT,
-					timeout.intValue());
-		if (readTimeout != null)
-			params.setIntParameter(CoreConnectionPNames.SO_TIMEOUT,
-					readTimeout.intValue());
-		if (followRedirects != null)
-			params.setBooleanParameter(ClientPNames.HANDLE_REDIRECTS,
-					followRedirects.booleanValue());
-		if (hostnameverifier != null) {
-			SSLSocketFactory sf;
-			sf = new SSLSocketFactory(getSSLContext(), hostnameverifier);
-			Scheme https = new Scheme("https", 443, sf); //$NON-NLS-1$
-			client.getConnectionManager().getSchemeRegistry().register(https);
+		if (client == null) {
+			HttpClientBuilder clientBuilder = HttpClients.custom();
+			RequestConfig.Builder configBuilder = RequestConfig.custom();
+			if (proxy != null && !Proxy.NO_PROXY.equals(proxy)) {
+				isUsingProxy = true;
+				InetSocketAddress adr = (InetSocketAddress) proxy.address();
+				clientBuilder.setProxy(
+						new HttpHost(adr.getHostName(), adr.getPort()));
+			}
+			if (timeout != null) {
+				configBuilder.setConnectTimeout(timeout.intValue());
+			}
+			if (readTimeout != null) {
+				configBuilder.setSocketTimeout(readTimeout.intValue());
+			}
+			if (followRedirects != null) {
+				configBuilder
+						.setRedirectsEnabled(followRedirects.booleanValue());
+			}
+			if (hostnameverifier != null) {
+				SSLConnectionSocketFactory sslConnectionFactory = new SSLConnectionSocketFactory(
+						getSSLContext(), hostnameverifier);
+				clientBuilder.setSSLSocketFactory(sslConnectionFactory);
+				Registry<ConnectionSocketFactory> registry = RegistryBuilder
+						.<ConnectionSocketFactory> create()
+						.register("https", sslConnectionFactory).build();
+				clientBuilder.setConnectionManager(
+						new BasicHttpClientConnectionManager(registry));
+			}
+			clientBuilder.setDefaultRequestConfig(configBuilder.build());
+			client = clientBuilder.build();
 		}
 
 		return client;

diff --git a/org.eclipse.jgit.http.server/.classpath b/org.eclipse.jgit.http.server/.classpath
index 04a2be7..cfcf24a 100644
--- a/org.eclipse.jgit.http.server/.classpath
+++ b/org.eclipse.jgit.http.server/.classpath

@@ -2,7 +2,7 @@
 <classpath>
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="src" path="resources"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="output" path="bin"/>
 </classpath>

diff --git a/org.eclipse.jgit.http.server/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.http.server/.settings/org.eclipse.jdt.core.prefs
index cd620c3..80cfbbb 100644
--- a/org.eclipse.jgit.http.server/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.http.server/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.http.server/META-INF/MANIFEST.MF b/org.eclipse.jgit.http.server/META-INF/MANIFEST.MF
index faad9c1..8351015 100644
--- a/org.eclipse.jgit.http.server/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.http.server/META-INF/MANIFEST.MF

@@ -2,27 +2,27 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.http.server
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Localization: plugin
 Bundle-Vendor: %provider_name
-Export-Package: org.eclipse.jgit.http.server;version="4.5.1",
- org.eclipse.jgit.http.server.glue;version="4.5.1";
+Export-Package: org.eclipse.jgit.http.server;version="4.6.0",
+ org.eclipse.jgit.http.server.glue;version="4.6.0";
   uses:="javax.servlet,javax.servlet.http",
- org.eclipse.jgit.http.server.resolver;version="4.5.1";
+ org.eclipse.jgit.http.server.resolver;version="4.6.0";
   uses:="org.eclipse.jgit.transport.resolver,
    org.eclipse.jgit.lib,
    org.eclipse.jgit.transport,
    javax.servlet.http"
 Bundle-ActivationPolicy: lazy
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Import-Package: javax.servlet;version="[2.5.0,3.2.0)",
  javax.servlet.http;version="[2.5.0,3.2.0)",
- org.eclipse.jgit.errors;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.dfs;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.nls;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.revwalk;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport.resolver;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)"
+ org.eclipse.jgit.errors;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.dfs;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.nls;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.revwalk;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport.resolver;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)"

diff --git a/org.eclipse.jgit.http.server/pom.xml b/org.eclipse.jgit.http.server/pom.xml
index 264879e..4d08ee9 100644
--- a/org.eclipse.jgit.http.server/pom.xml
+++ b/org.eclipse.jgit.http.server/pom.xml

@@ -52,7 +52,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.http.server</artifactId>

diff --git a/org.eclipse.jgit.http.server/src/org/eclipse/jgit/http/server/glue/WrappedRequest.java b/org.eclipse.jgit.http.server/src/org/eclipse/jgit/http/server/glue/WrappedRequest.java
index 7f8da7c..b702c07 100644
--- a/org.eclipse.jgit.http.server/src/org/eclipse/jgit/http/server/glue/WrappedRequest.java
+++ b/org.eclipse.jgit.http.server/src/org/eclipse/jgit/http/server/glue/WrappedRequest.java

@@ -72,7 +72,7 @@ public WrappedRequest(final HttpServletRequest originalRequest,
 	@Override
 	public String getPathTranslated() {
 		final String p = getPathInfo();
-		return p != null ? getRealPath(p) : null;
+		return p != null ? getSession().getServletContext().getRealPath(p) : null;
 	}
 
 	@Override

diff --git a/org.eclipse.jgit.http.test/.classpath b/org.eclipse.jgit.http.test/.classpath
index e1a1a64..e6014c7 100644
--- a/org.eclipse.jgit.http.test/.classpath
+++ b/org.eclipse.jgit.http.test/.classpath

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="src" path="tst"/>
 	<classpathentry kind="src" path="src"/>

diff --git a/org.eclipse.jgit.http.test/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.http.test/.settings/org.eclipse.jdt.core.prefs
index 87210fb..10c29d5 100644
--- a/org.eclipse.jgit.http.test/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.http.test/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.http.test/META-INF/MANIFEST.MF b/org.eclipse.jgit.http.test/META-INF/MANIFEST.MF
index 9ea30e4..ad8539f 100644
--- a/org.eclipse.jgit.http.test/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.http.test/META-INF/MANIFEST.MF

@@ -2,10 +2,10 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.http.test
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Vendor: %provider_name
 Bundle-Localization: plugin
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Import-Package: javax.servlet;version="[2.5.0,3.2.0)",
  javax.servlet.http;version="[2.5.0,3.2.0)",
  org.eclipse.jetty.continuation;version="[9.0.0,10.0.0)",
@@ -22,24 +22,24 @@
  org.eclipse.jetty.util.log;version="[9.0.0,10.0.0)",
  org.eclipse.jetty.util.security;version="[9.0.0,10.0.0)",
  org.eclipse.jetty.util.thread;version="[9.0.0,10.0.0)",
- org.eclipse.jgit.errors;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.http.server;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.http.server.glue;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.http.server.resolver;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.dfs;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.junit;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.junit.http;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.nls;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.revwalk;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport.http;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport.http.apache;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport.resolver;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)",
+ org.eclipse.jgit.errors;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.http.server;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.http.server.glue;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.http.server.resolver;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.dfs;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.junit;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.junit.http;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.nls;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.revwalk;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport.http;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport.http.apache;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport.resolver;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)",
  org.hamcrest.core;version="[1.1.0,2.0.0)",
  org.junit;version="[4.0.0,5.0.0)",
  org.junit.runner;version="[4.0.0,5.0.0)",

diff --git a/org.eclipse.jgit.http.test/pom.xml b/org.eclipse.jgit.http.test/pom.xml
index a64ce07..4c1be08 100644
--- a/org.eclipse.jgit.http.test/pom.xml
+++ b/org.eclipse.jgit.http.test/pom.xml

@@ -51,7 +51,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.http.test</artifactId>

diff --git a/org.eclipse.jgit.junit.http/.classpath b/org.eclipse.jgit.junit.http/.classpath
index b1dabee..b862a29 100644
--- a/org.eclipse.jgit.junit.http/.classpath
+++ b/org.eclipse.jgit.junit.http/.classpath

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>

 <classpath>

-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>

+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>

 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>

 	<classpathentry kind="src" path="src"/>

 	<classpathentry kind="output" path="bin"/>


diff --git a/org.eclipse.jgit.junit.http/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.junit.http/.settings/org.eclipse.jdt.core.prefs
index 87210fb..10c29d5 100644
--- a/org.eclipse.jgit.junit.http/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.junit.http/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.junit.http/META-INF/MANIFEST.MF b/org.eclipse.jgit.junit.http/META-INF/MANIFEST.MF
index 27793a0..2d68344 100644
--- a/org.eclipse.jgit.junit.http/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.junit.http/META-INF/MANIFEST.MF

@@ -2,11 +2,11 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.junit.http
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Localization: plugin
 Bundle-Vendor: %provider_name
 Bundle-ActivationPolicy: lazy
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Import-Package: javax.servlet;version="[2.5.0,3.2.0)",
  javax.servlet.http;version="[2.5.0,3.2.0)",
  org.apache.commons.logging;version="[1.1.1,2.0.0)",
@@ -20,16 +20,16 @@
  org.eclipse.jetty.util.component;version="[9.0.0,10.0.0)",
  org.eclipse.jetty.util.log;version="[9.0.0,10.0.0)",
  org.eclipse.jetty.util.security;version="[9.0.0,10.0.0)",
- org.eclipse.jgit.errors;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.http.server;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.junit;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.revwalk;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport.resolver;version="[4.5.1,4.6.0)",
+ org.eclipse.jgit.errors;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.http.server;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.junit;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.revwalk;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport.resolver;version="[4.6.0,4.7.0)",
  org.junit;version="[4.0.0,5.0.0)"
-Export-Package: org.eclipse.jgit.junit.http;version="4.5.1";
+Export-Package: org.eclipse.jgit.junit.http;version="4.6.0";
   uses:="org.eclipse.jgit.transport,
    org.eclipse.jgit.junit,
    javax.servlet.http,

diff --git a/org.eclipse.jgit.junit.http/pom.xml b/org.eclipse.jgit.junit.http/pom.xml
index bbe166d..79172a1 100644
--- a/org.eclipse.jgit.junit.http/pom.xml
+++ b/org.eclipse.jgit.junit.http/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.junit.http</artifactId>

diff --git a/org.eclipse.jgit.junit.http/src/org/eclipse/jgit/junit/http/AppServer.java b/org.eclipse.jgit.junit.http/src/org/eclipse/jgit/junit/http/AppServer.java
index cca4f43..44c1977 100644
--- a/org.eclipse.jgit.junit.http/src/org/eclipse/jgit/junit/http/AppServer.java
+++ b/org.eclipse.jgit.junit.http/src/org/eclipse/jgit/junit/http/AppServer.java

@@ -185,13 +185,11 @@ protected void loadUsers() throws IOException {
 			putUser(username, new Password(password), new String[] { role });
 		}
 
-		protected String[] loadRoleInfo(
-				@SuppressWarnings("unused") KnownUser user) {
+		protected String[] loadRoleInfo(KnownUser user) {
 			return null;
 		}
 
-		protected KnownUser loadUserInfo(
-				@SuppressWarnings("unused") String usrname) {
+		protected KnownUser loadUserInfo(String usrname) {
 			return null;
 		}
 	}

diff --git a/org.eclipse.jgit.junit/.classpath b/org.eclipse.jgit.junit/.classpath
index 098194c..eca7bdb 100644
--- a/org.eclipse.jgit.junit/.classpath
+++ b/org.eclipse.jgit.junit/.classpath

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="output" path="bin"/>

diff --git a/org.eclipse.jgit.junit/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.junit/.settings/org.eclipse.jdt.core.prefs
index 87210fb..10c29d5 100644
--- a/org.eclipse.jgit.junit/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.junit/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.junit/META-INF/MANIFEST.MF b/org.eclipse.jgit.junit/META-INF/MANIFEST.MF
index f8c20b4..d7ce175 100644
--- a/org.eclipse.jgit.junit/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.junit/META-INF/MANIFEST.MF

@@ -2,30 +2,30 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.junit
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Localization: plugin
 Bundle-Vendor: %provider_name
 Bundle-ActivationPolicy: lazy
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
-Import-Package: org.eclipse.jgit.api;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.api.errors;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.dircache;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.errors;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.pack;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.merge;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.revwalk;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.treewalk;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.treewalk.filter;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util.io;version="[4.5.1,4.6.0)",
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
+Import-Package: org.eclipse.jgit.api;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.api.errors;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.dircache;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.errors;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.pack;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.merge;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.revwalk;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.treewalk;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.treewalk.filter;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util.io;version="[4.6.0,4.7.0)",
  org.junit;version="[4.0.0,5.0.0)",
  org.junit.rules;version="[4.9.0,5.0.0)",
  org.junit.runner;version="[4.0.0,5.0.0)",
  org.junit.runners.model;version="[4.5.0,5.0.0)"
-Export-Package: org.eclipse.jgit.junit;version="4.5.1";
+Export-Package: org.eclipse.jgit.junit;version="4.6.0";
   uses:="org.eclipse.jgit.dircache,
    org.eclipse.jgit.lib,
    org.eclipse.jgit.revwalk,

diff --git a/org.eclipse.jgit.junit/pom.xml b/org.eclipse.jgit.junit/pom.xml
index b812fdc..fbe56fc 100644
--- a/org.eclipse.jgit.junit/pom.xml
+++ b/org.eclipse.jgit.junit/pom.xml

@@ -52,7 +52,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.junit</artifactId>

diff --git a/org.eclipse.jgit.lfs.server.test/.classpath b/org.eclipse.jgit.lfs.server.test/.classpath
index 2fdcc94..4f9f6bf 100644
--- a/org.eclipse.jgit.lfs.server.test/.classpath
+++ b/org.eclipse.jgit.lfs.server.test/.classpath

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="src" path="tst"/>
 	<classpathentry kind="output" path="bin"/>

diff --git a/org.eclipse.jgit.lfs.server.test/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.lfs.server.test/.settings/org.eclipse.jdt.core.prefs
index 87210fb..10c29d5 100644
--- a/org.eclipse.jgit.lfs.server.test/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.lfs.server.test/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.lfs.server.test/META-INF/MANIFEST.MF b/org.eclipse.jgit.lfs.server.test/META-INF/MANIFEST.MF
index 63000b0..49a1120 100644
--- a/org.eclipse.jgit.lfs.server.test/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.lfs.server.test/META-INF/MANIFEST.MF

@@ -2,10 +2,10 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.lfs.server.test
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Vendor: %provider_name
 Bundle-Localization: plugin
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Import-Package: javax.servlet;version="[3.1.0,4.0.0)",
  javax.servlet.http;version="[3.1.0,4.0.0)",
  org.apache.http;version="[4.3.0,5.0.0)",
@@ -27,11 +27,11 @@
  org.eclipse.jetty.util.log;version="[9.0.0,10.0.0)",
  org.eclipse.jetty.util.security;version="[9.0.0,10.0.0)",
  org.eclipse.jetty.util.thread;version="[9.0.0,10.0.0)",
- org.eclipse.jgit.junit.http;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lfs.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lfs.server.fs;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lfs.test;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)",
+ org.eclipse.jgit.junit.http;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs.server.fs;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs.test;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)",
  org.hamcrest.core;version="[1.1.0,2.0.0)",
  org.junit;version="[4.0.0,5.0.0)",
  org.junit.runner;version="[4.0.0,5.0.0)",

diff --git a/org.eclipse.jgit.lfs.server.test/pom.xml b/org.eclipse.jgit.lfs.server.test/pom.xml
index 5189c77..61e1239 100644
--- a/org.eclipse.jgit.lfs.server.test/pom.xml
+++ b/org.eclipse.jgit.lfs.server.test/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.lfs.server.test</artifactId>

diff --git a/org.eclipse.jgit.lfs.server.test/tst/org/eclipse/jgit/lfs/server/fs/LfsServerTest.java b/org.eclipse.jgit.lfs.server.test/tst/org/eclipse/jgit/lfs/server/fs/LfsServerTest.java
index 4d948b9..e10660d 100644
--- a/org.eclipse.jgit.lfs.server.test/tst/org/eclipse/jgit/lfs/server/fs/LfsServerTest.java
+++ b/org.eclipse.jgit.lfs.server.test/tst/org/eclipse/jgit/lfs/server/fs/LfsServerTest.java

@@ -84,7 +84,6 @@
 import org.junit.After;
 import org.junit.Before;
 
-@SuppressWarnings("restriction")
 public abstract class LfsServerTest {
 
 	private static final long timeout = /* 10 sec */ 10 * 1000;

diff --git a/org.eclipse.jgit.lfs.server/.classpath b/org.eclipse.jgit.lfs.server/.classpath
index 04a2be7..cfcf24a 100644
--- a/org.eclipse.jgit.lfs.server/.classpath
+++ b/org.eclipse.jgit.lfs.server/.classpath

@@ -2,7 +2,7 @@
 <classpath>
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="src" path="resources"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="output" path="bin"/>
 </classpath>

diff --git a/org.eclipse.jgit.lfs.server/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.lfs.server/.settings/org.eclipse.jdt.core.prefs
index 1ce7cd0..808ec3a 100644
--- a/org.eclipse.jgit.lfs.server/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.lfs.server/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.lfs.server/META-INF/MANIFEST.MF b/org.eclipse.jgit.lfs.server/META-INF/MANIFEST.MF
index 5ff701d..459118f 100644
--- a/org.eclipse.jgit.lfs.server/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.lfs.server/META-INF/MANIFEST.MF

@@ -2,34 +2,35 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.lfs.server
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Localization: plugin
 Bundle-Vendor: %provider_name
-Export-Package: org.eclipse.jgit.lfs.server;version="4.5.1";
+Export-Package: org.eclipse.jgit.lfs.server;version="4.6.0";
   uses:="javax.servlet.http,
    org.eclipse.jgit.lfs.lib",
- org.eclipse.jgit.lfs.server.fs;version="4.5.1";
+ org.eclipse.jgit.lfs.server.fs;version="4.6.0";
   uses:="javax.servlet,
    javax.servlet.http,
    org.eclipse.jgit.lfs.server,
    org.eclipse.jgit.lfs.lib",
- org.eclipse.jgit.lfs.server.internal;version="4.5.1";x-internal:=true,
- org.eclipse.jgit.lfs.server.s3;version="4.5.1";
+ org.eclipse.jgit.lfs.server.internal;version="4.6.0";x-internal:=true,
+ org.eclipse.jgit.lfs.server.s3;version="4.6.0";
   uses:="org.eclipse.jgit.lfs.server,
    org.eclipse.jgit.lfs.lib"
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Import-Package: com.google.gson;version="[2.2.4,3.0.0)",
  javax.servlet;version="[3.1.0,4.0.0)",
  javax.servlet.annotation;version="[3.1.0,4.0.0)",
  javax.servlet.http;version="[3.1.0,4.0.0)",
  org.apache.http;version="[4.3.0,5.0.0)",
  org.apache.http.client;version="[4.3.0,5.0.0)",
- org.eclipse.jgit.annotations;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lfs.errors;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lfs.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.nls;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport.http;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport.http.apache;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)"
+ org.eclipse.jgit.annotations;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs.errors;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs.internal;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.nls;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport.http;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport.http.apache;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)"

diff --git a/org.eclipse.jgit.lfs.server/pom.xml b/org.eclipse.jgit.lfs.server/pom.xml
index e743532..55b863b 100644
--- a/org.eclipse.jgit.lfs.server/pom.xml
+++ b/org.eclipse.jgit.lfs.server/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.lfs.server</artifactId>

diff --git a/org.eclipse.jgit.lfs.server/resources/org/eclipse/jgit/lfs/server/internal/LfsServerText.properties b/org.eclipse.jgit.lfs.server/resources/org/eclipse/jgit/lfs/server/internal/LfsServerText.properties
index f97acac..b2b487e 100644
--- a/org.eclipse.jgit.lfs.server/resources/org/eclipse/jgit/lfs/server/internal/LfsServerText.properties
+++ b/org.eclipse.jgit.lfs.server/resources/org/eclipse/jgit/lfs/server/internal/LfsServerText.properties

@@ -1,4 +1,3 @@
-corruptLongObject=The content hash ''{0}'' of the long object ''{1}'' doesn''t match its id, the corrupt object will be deleted.
 failedToCalcSignature=Failed to calculate a request signature: {0}
 invalidPathInfo=Invalid pathInfo ''{0}'' does not match ''/'{'SHA-256'}'''
 objectNotFound=Object ''{0}'' not found

diff --git a/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/fs/FileLfsRepository.java b/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/fs/FileLfsRepository.java
index dd70a36..a05fa01 100644
--- a/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/fs/FileLfsRepository.java
+++ b/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/fs/FileLfsRepository.java

@@ -53,6 +53,7 @@
 import java.util.Collections;
 
 import org.eclipse.jgit.annotations.Nullable;
+import org.eclipse.jgit.lfs.internal.AtomicObjectOutputStream;
 import org.eclipse.jgit.lfs.lib.AnyLongObjectId;
 import org.eclipse.jgit.lfs.lib.Constants;
 import org.eclipse.jgit.lfs.server.LargeFileRepository;

diff --git a/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/fs/ObjectUploadListener.java b/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/fs/ObjectUploadListener.java
index d44b3db..bb31743 100644
--- a/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/fs/ObjectUploadListener.java
+++ b/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/fs/ObjectUploadListener.java

@@ -59,6 +59,7 @@
 
 import org.apache.http.HttpStatus;
 import org.eclipse.jgit.lfs.errors.CorruptLongObjectException;
+import org.eclipse.jgit.lfs.internal.AtomicObjectOutputStream;
 import org.eclipse.jgit.lfs.lib.AnyLongObjectId;
 import org.eclipse.jgit.lfs.lib.Constants;
 

diff --git a/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/internal/LfsServerText.java b/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/internal/LfsServerText.java
index c5ad53a..2e088fd 100644
--- a/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/internal/LfsServerText.java
+++ b/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/internal/LfsServerText.java

@@ -58,7 +58,6 @@ public static LfsServerText get() {
 	}
 
 	// @formatter:off
-	/***/ public String corruptLongObject;
 	/***/ public String failedToCalcSignature;
 	/***/ public String invalidPathInfo;
 	/***/ public String objectNotFound;

diff --git a/org.eclipse.jgit.lfs.test/.classpath b/org.eclipse.jgit.lfs.test/.classpath
index efc781d..e43ae76 100644
--- a/org.eclipse.jgit.lfs.test/.classpath
+++ b/org.eclipse.jgit.lfs.test/.classpath

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="src" path="tst"/>

diff --git a/org.eclipse.jgit.lfs.test/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.lfs.test/.settings/org.eclipse.jdt.core.prefs
index 87210fb..10c29d5 100644
--- a/org.eclipse.jgit.lfs.test/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.lfs.test/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.lfs.test/META-INF/MANIFEST.MF b/org.eclipse.jgit.lfs.test/META-INF/MANIFEST.MF
index 430db2b..02bc685 100644
--- a/org.eclipse.jgit.lfs.test/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.lfs.test/META-INF/MANIFEST.MF

@@ -2,18 +2,18 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.lfs.test
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Vendor: %provider_name
 Bundle-Localization: plugin
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
-Import-Package: org.eclipse.jgit.junit;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lfs.errors;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lfs.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)",
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
+Import-Package: org.eclipse.jgit.junit;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs.errors;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)",
  org.hamcrest.core;version="[1.1.0,2.0.0)",
  org.junit;version="[4.0.0,5.0.0)",
  org.junit.runner;version="[4.0.0,5.0.0)",
  org.junit.runners;version="[4.0.0,5.0.0)"
-Export-Package: org.eclipse.jgit.lfs.test;version="4.5.1";x-friends:="org.eclipse.jgit.lfs.server.test"
+Export-Package: org.eclipse.jgit.lfs.test;version="4.6.0";x-friends:="org.eclipse.jgit.lfs.server.test"
 

diff --git a/org.eclipse.jgit.lfs.test/pom.xml b/org.eclipse.jgit.lfs.test/pom.xml
index 2c77ddb..b3dc7d6 100644
--- a/org.eclipse.jgit.lfs.test/pom.xml
+++ b/org.eclipse.jgit.lfs.test/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.lfs.test</artifactId>

diff --git a/org.eclipse.jgit.lfs/.classpath b/org.eclipse.jgit.lfs/.classpath
index 04a2be7..cfcf24a 100644
--- a/org.eclipse.jgit.lfs/.classpath
+++ b/org.eclipse.jgit.lfs/.classpath

@@ -2,7 +2,7 @@
 <classpath>
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="src" path="resources"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="output" path="bin"/>
 </classpath>

diff --git a/org.eclipse.jgit.lfs/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.lfs/.settings/org.eclipse.jdt.core.prefs
index 1ce7cd0..808ec3a 100644
--- a/org.eclipse.jgit.lfs/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.lfs/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.lfs/META-INF/MANIFEST.MF b/org.eclipse.jgit.lfs/META-INF/MANIFEST.MF
index 03e7bc7..8252603 100644
--- a/org.eclipse.jgit.lfs/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.lfs/META-INF/MANIFEST.MF

@@ -2,14 +2,17 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.lfs
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Localization: plugin
 Bundle-Vendor: %provider_name
-Export-Package: org.eclipse.jgit.lfs.errors;version="4.5.1",
- org.eclipse.jgit.lfs.internal;version="4.5.1";x-friends:="org.eclipse.jgit.lfs.test",
- org.eclipse.jgit.lfs.lib;version="4.5.1"
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
-Import-Package: org.eclipse.jgit.internal.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.nls;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)"
+Export-Package: org.eclipse.jgit.lfs;version="4.6.0",
+ org.eclipse.jgit.lfs.errors;version="4.6.0",
+ org.eclipse.jgit.lfs.internal;version="4.6.0";x-friends:="org.eclipse.jgit.lfs.test,org.eclipse.jgit.lfs.server.fs,org.eclipse.jgit.lfs.server",
+ org.eclipse.jgit.lfs.lib;version="4.6.0"
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
+Import-Package: org.eclipse.jgit.annotations;version="[4.6.0,4.7.0)";resolution:=optional,
+ org.eclipse.jgit.attributes;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.nls;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)"

diff --git a/org.eclipse.jgit.lfs/pom.xml b/org.eclipse.jgit.lfs/pom.xml
index 2d3bb62..6e0c461 100644
--- a/org.eclipse.jgit.lfs/pom.xml
+++ b/org.eclipse.jgit.lfs/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.lfs</artifactId>

diff --git a/org.eclipse.jgit.lfs/resources/org/eclipse/jgit/lfs/internal/LfsText.properties b/org.eclipse.jgit.lfs/resources/org/eclipse/jgit/lfs/internal/LfsText.properties
index 7c3aea2..5e52a78 100644
--- a/org.eclipse.jgit.lfs/resources/org/eclipse/jgit/lfs/internal/LfsText.properties
+++ b/org.eclipse.jgit.lfs/resources/org/eclipse/jgit/lfs/internal/LfsText.properties

@@ -1,7 +1,9 @@
+corruptLongObject=The content hash ''{0}'' of the long object ''{1}'' doesn''t match its id, the corrupt object will be deleted.
 incorrectLONG_OBJECT_ID_LENGTH=Incorrect LONG_OBJECT_ID_LENGTH.
+inconsistentMediafileLength=mediafile {0} has unexpected length; expected {1} but found {2}.
 invalidLongId=Invalid id: {0}
 invalidLongIdLength=Invalid id length {0}; should be {1}
 requiredHashFunctionNotAvailable=Required hash function {0} not available.
 repositoryNotFound=Repository {0} not found
 repositoryReadOnly=Repository {0} is read-only
-lfsUnavailable=LFS is not available for repository {0}
\ No newline at end of file
+lfsUnavailable=LFS is not available for repository {0}

diff --git a/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/CleanFilter.java b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/CleanFilter.java
new file mode 100644
index 0000000..f7b55e5
--- /dev/null
+++ b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/CleanFilter.java

@@ -0,0 +1,176 @@
+/*
+ * Copyright (C) 2016, Christian Halstrick <christian.halstrick@sap.com>
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.lfs;
+
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.OutputStream;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.nio.file.StandardOpenOption;
+import java.security.DigestOutputStream;
+
+import org.eclipse.jgit.attributes.FilterCommand;
+import org.eclipse.jgit.attributes.FilterCommandFactory;
+import org.eclipse.jgit.attributes.FilterCommandRegistry;
+import org.eclipse.jgit.lfs.errors.CorruptMediaFile;
+import org.eclipse.jgit.lfs.lib.Constants;
+import org.eclipse.jgit.lfs.lib.LongObjectId;
+import org.eclipse.jgit.lib.Repository;
+import org.eclipse.jgit.util.FileUtils;
+
+/**
+ * Built-in LFS clean filter
+ *
+ * When new content is about to be added to the git repository and this filter
+ * is configured for that content, then this filter will replace the original
+ * content with content of a so-called LFS pointer file. The pointer file
+ * content will then be added to the git repository. Additionally this filter
+ * writes the original content in a so-called 'media file' to '.git/lfs/objects/
+ * <first-two-characters-of-contentid>/<rest-of-contentid>'
+ *
+ * @see <a href="https://github.com/github/git-lfs/blob/master/docs/spec.md">Git
+ *      LFS Specification</a>
+ * @since 4.6
+ */
+public class CleanFilter extends FilterCommand {
+	/**
+	 * The factory is responsible for creating instances of {@link CleanFilter}
+	 */
+	public final static FilterCommandFactory FACTORY = new FilterCommandFactory() {
+
+		@Override
+		public FilterCommand create(Repository db, InputStream in,
+				OutputStream out) throws IOException {
+			return new CleanFilter(db, in, out);
+		}
+	};
+
+	/**
+	 * Registers this filter by calling
+	 * {@link FilterCommandRegistry#register(String, FilterCommandFactory)}
+	 */
+	public final static void register() {
+		FilterCommandRegistry.register(
+				org.eclipse.jgit.lib.Constants.BUILTIN_FILTER_PREFIX
+						+ "lfs/clean", //$NON-NLS-1$
+				FACTORY);
+	}
+
+	// The OutputStream to a temporary file which will be renamed to mediafile
+	// when the operation succeeds
+	private OutputStream tmpOut;
+
+	// Used to compute the hash for the original content
+	private DigestOutputStream dOut;
+
+	private Lfs lfsUtil;
+
+	// the size of the original content
+	private long size;
+
+	// a temporary file into which the original content is written. When no
+	// errors occur this file will be renamed to the mediafile
+	private Path tmpFile;
+
+	/**
+	 * @param db
+	 *            the repository
+	 * @param in
+	 *            an {@link InputStream} providing the original content
+	 * @param out
+	 *            the {@link OutputStream} into which the content of the pointer
+	 *            file should be written. That's the content which will be added
+	 *            to the git repository
+	 * @throws IOException
+	 *             when the creation of the temporary file fails or when no
+	 *             {@link OutputStream} for this file can be created
+	 */
+	public CleanFilter(Repository db, InputStream in, OutputStream out)
+			throws IOException {
+		super(in, out);
+		lfsUtil = new Lfs(db.getDirectory().toPath().resolve("lfs")); //$NON-NLS-1$
+		Files.createDirectories(lfsUtil.getLfsTmpDir());
+		tmpFile = lfsUtil.createTmpFile();
+		tmpOut = Files.newOutputStream(tmpFile,
+				StandardOpenOption.CREATE);
+		this.dOut = new DigestOutputStream(
+				tmpOut,
+				Constants.newMessageDigest());
+	}
+
+	public int run() throws IOException {
+		try {
+			int b = in.read();
+			if (b != -1) {
+				dOut.write(b);
+				size++;
+				return 1;
+			} else {
+				dOut.close();
+				tmpOut.close();
+				LongObjectId loid = LongObjectId
+						.fromRaw(dOut.getMessageDigest().digest());
+				Path mediaFile = lfsUtil.getMediaFile(loid);
+				if (Files.isRegularFile(mediaFile)) {
+					long fsSize = Files.size(mediaFile);
+					if (fsSize != size) {
+						throw new CorruptMediaFile(mediaFile, size, fsSize);
+					}
+				} else {
+					FileUtils.mkdirs(mediaFile.getParent().toFile(), true);
+					FileUtils.rename(tmpFile.toFile(), mediaFile.toFile());
+				}
+				LfsPointer lfsPointer = new LfsPointer(loid, size);
+				lfsPointer.encode(out);
+				out.close();
+				return -1;
+			}
+		} catch (IOException e) {
+			out.close();
+			dOut.close();
+			tmpOut.close();
+			throw e;
+		}
+	}
+}

diff --git a/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/Lfs.java b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/Lfs.java
new file mode 100644
index 0000000..f099c5a
--- /dev/null
+++ b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/Lfs.java

@@ -0,0 +1,124 @@
+/*
+ * Copyright (C) 2016, Christian Halstrick <christian.halstrick@sap.com>
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.lfs;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+
+import org.eclipse.jgit.lfs.lib.LongObjectId;
+
+/**
+ * Class which represents the lfs folder hierarchy inside a .git folder
+ *
+ * @since 4.6
+ */
+public class Lfs {
+	private Path root;
+
+	private Path objDir;
+
+	private Path tmpDir;
+
+	/**
+	 * @param root
+	 *            the path to the LFS media directory. Will be "<repo>/.git/lfs"
+	 */
+	public Lfs(Path root) {
+		this.root = root;
+	}
+
+	/**
+	 * @return the path to the LFS directory
+	 */
+	public Path getLfsRoot() {
+		return root;
+	}
+
+	/**
+	 * @return the path to the temp directory used by LFS. Will be
+	 *         "<repo>/.git/lfs/tmp"
+	 */
+	public Path getLfsTmpDir() {
+		if (tmpDir == null) {
+			tmpDir = root.resolve("tmp"); //$NON-NLS-1$
+		}
+		return tmpDir;
+	}
+
+	/**
+	 * @return the path to the object directory used by LFS. Will be
+	 *         "<repo>/.git/lfs/objects"
+	 */
+	public Path getLfsObjDir() {
+		if (objDir == null) {
+			objDir = root.resolve("objects"); //$NON-NLS-1$
+		}
+		return objDir;
+	}
+
+	/**
+	 * @param id
+	 *            the id of the mediafile
+	 * @return the file which stores the original content. This will be files
+	 *         underneath
+	 *         "<repo>/.git/lfs/objects/<firstTwoLettersOfID>/<remainingLettersOfID>"
+	 */
+	public Path getMediaFile(LongObjectId id) {
+		String idStr = LongObjectId.toString(id);
+		return getLfsObjDir().resolve(idStr.substring(0, 2))
+				.resolve(idStr.substring(2));
+	}
+
+	/**
+	 * Create a new temp file in the LFS directory
+	 *
+	 * @return a new temporary file in the LFS directory
+	 * @throws IOException
+	 *             when the temp file could not be created
+	 */
+	public Path createTmpFile() throws IOException {
+		return Files.createTempFile(getLfsTmpDir(), null, null);
+	}
+
+}

diff --git a/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/LfsPointer.java b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/LfsPointer.java
new file mode 100644
index 0000000..e43cb25
--- /dev/null
+++ b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/LfsPointer.java

@@ -0,0 +1,167 @@
+/*
+ * Copyright (C) 2016, Christian Halstrick <christian.halstrick@sap.com>
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.lfs;
+
+import java.io.BufferedReader;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.InputStreamReader;
+import java.io.OutputStream;
+import java.io.PrintStream;
+
+import org.eclipse.jgit.annotations.Nullable;
+import org.eclipse.jgit.lfs.lib.Constants;
+import org.eclipse.jgit.lfs.lib.LongObjectId;
+
+/**
+ * Represents an LFS pointer file
+ *
+ * @since 4.6
+ */
+public class LfsPointer {
+	/**
+	 * The version of the LfsPointer file format
+	 */
+	public static final String VERSION = "https://git-lfs.github.com/spec/v1"; //$NON-NLS-1$
+
+	/**
+	 * The name of the hash function as used in the pointer files. This will
+	 * evaluate to "sha256"
+	 */
+	public static final String HASH_FUNCTION_NAME = Constants.LONG_HASH_FUNCTION
+			.toLowerCase().replace("-", ""); //$NON-NLS-1$ //$NON-NLS-2$
+
+	private LongObjectId oid;
+
+	private long size;
+
+	/**
+	 * @param oid
+	 *            the id of the content
+	 * @param size
+	 *            the size of the content
+	 */
+	public LfsPointer(LongObjectId oid, long size) {
+		this.oid = oid;
+		this.size = size;
+	}
+
+	/**
+	 * @return the id of the content
+	 */
+	public LongObjectId getOid() {
+		return oid;
+	}
+
+	/**
+	 * @return the size of the content
+	 */
+	public long getSize() {
+		return size;
+	}
+
+	/**
+	 * Encode this object into the LFS format defined by {@link #VERSION}
+	 *
+	 * @param out
+	 *            the {@link OutputStream} into which the encoded data should be
+	 *            written
+	 */
+	public void encode(OutputStream out) {
+		try (PrintStream ps = new PrintStream(out)) {
+			ps.print("version "); //$NON-NLS-1$
+			ps.println(VERSION);
+			ps.print("oid " + HASH_FUNCTION_NAME + ":"); //$NON-NLS-1$ //$NON-NLS-2$
+			ps.println(LongObjectId.toString(oid));
+			ps.print("size "); //$NON-NLS-1$
+			ps.println(size);
+		}
+	}
+
+	/**
+	 * Try to parse the data provided by an InputStream to the format defined by
+	 * {@link #VERSION}
+	 *
+	 * @param in
+	 *            the {@link InputStream} from where to read the data
+	 * @return an {@link LfsPointer} or <code>null</code> if the stream was not
+	 *         parseable as LfsPointer
+	 * @throws IOException
+	 */
+	@Nullable
+	public static LfsPointer parseLfsPointer(InputStream in)
+			throws IOException {
+		boolean versionLine = false;
+		LongObjectId id = null;
+		long sz = -1;
+
+		try (BufferedReader br = new BufferedReader(
+				new InputStreamReader(in))) {
+			for (String s = br.readLine(); s != null; s = br.readLine()) {
+				if (s.startsWith("#") || s.length() == 0) { //$NON-NLS-1$
+					continue;
+				} else if (s.startsWith("version") && s.length() > 8 //$NON-NLS-1$
+						&& s.substring(8).trim().equals(VERSION)) {
+					versionLine = true;
+				} else if (s.startsWith("oid sha256:")) { //$NON-NLS-1$
+					id = LongObjectId.fromString(s.substring(11).trim());
+				} else if (s.startsWith("size") && s.length() > 5) { //$NON-NLS-1$
+					sz = Long.parseLong(s.substring(5).trim());
+				} else {
+					return null;
+				}
+			}
+			if (versionLine && id != null && sz > -1) {
+				return new LfsPointer(id, sz);
+			}
+		}
+		return null;
+	}
+
+	@Override
+	public String toString() {
+		return "LfsPointer: oid=" + LongObjectId.toString(oid) + ", size=" //$NON-NLS-1$ //$NON-NLS-2$
+				+ size;
+	}
+}
+

diff --git a/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/SmudgeFilter.java b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/SmudgeFilter.java
new file mode 100644
index 0000000..2332477
--- /dev/null
+++ b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/SmudgeFilter.java

@@ -0,0 +1,125 @@
+/*
+ * Copyright (C) 2016, Christian Halstrick <christian.halstrick@sap.com>
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.lfs;
+
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.OutputStream;
+import java.nio.file.Files;
+import java.nio.file.Path;
+
+import org.eclipse.jgit.attributes.FilterCommand;
+import org.eclipse.jgit.attributes.FilterCommandFactory;
+import org.eclipse.jgit.attributes.FilterCommandRegistry;
+import org.eclipse.jgit.lfs.lib.Constants;
+import org.eclipse.jgit.lib.Repository;
+
+/**
+ * Built-in LFS smudge filter
+ *
+ * When content is read from git's object-database and written to the filesystem
+ * and this filter is configured for that content, then this filter will replace
+ * the content of LFS pointer files with the original content. This happens e.g.
+ * when a checkout needs to update a working tree file which is under LFS
+ * control. This implementation expects that the origin content is already
+ * available in the .git/lfs/objects folder. This implementation will not
+ * contact any LFS servers in order to get the missing content.
+ *
+ * @since 4.6
+ */
+public class SmudgeFilter extends FilterCommand {
+	/**
+	 * The factory is responsible for creating instances of {@link SmudgeFilter}
+	 */
+	public final static FilterCommandFactory FACTORY = new FilterCommandFactory() {
+		@Override
+		public FilterCommand create(Repository db, InputStream in,
+				OutputStream out) throws IOException {
+			return new SmudgeFilter(db, in, out);
+		}
+	};
+
+	/**
+	 * Registers this filter in JGit by calling
+	 */
+	public final static void register() {
+		FilterCommandRegistry.register(
+				org.eclipse.jgit.lib.Constants.BUILTIN_FILTER_PREFIX
+						+ "lfs/smudge", //$NON-NLS-1$
+				FACTORY);
+	}
+
+	private Lfs lfs;
+
+	/**
+	 * @param db
+	 * @param in
+	 * @param out
+	 * @throws IOException
+	 */
+	public SmudgeFilter(Repository db, InputStream in, OutputStream out)
+			throws IOException {
+		super(in, out);
+		lfs = new Lfs(db.getDirectory().toPath().resolve(Constants.LFS));
+		LfsPointer res = LfsPointer.parseLfsPointer(in);
+		if (res != null) {
+			Path mediaFile = lfs.getMediaFile(res.getOid());
+			if (Files.exists(mediaFile)) {
+				this.in = Files.newInputStream(mediaFile);
+			}
+		}
+	}
+
+	@Override
+	public int run() throws IOException {
+		int b;
+		if (in != null) {
+			while ((b = in.read()) != -1) {
+				out.write(b);
+			}
+			in.close();
+		}
+		out.close();
+		return -1;
+	}
+}

diff --git a/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/errors/CorruptMediaFile.java b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/errors/CorruptMediaFile.java
new file mode 100644
index 0000000..f2b51c0
--- /dev/null
+++ b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/errors/CorruptMediaFile.java

@@ -0,0 +1,100 @@
+/*
+ * Copyright (C) 2016, Christian Halstrick <christian.halstrick@sap.com>
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.lfs.errors;
+
+import java.io.IOException;
+import java.nio.file.Path;
+import java.text.MessageFormat;
+
+import org.eclipse.jgit.lfs.internal.LfsText;
+
+/**
+ * Thrown when a LFS mediafile is found which doesn't have the expected size
+ *
+ * @since 4.6
+ */
+public class CorruptMediaFile extends IOException {
+	private static final long serialVersionUID = 1L;
+
+	private Path mediaFile;
+
+	private long expectedSize;
+
+	private long size;
+
+	/**
+	 * @param mediaFile
+	 * @param expectedSize
+	 * @param size
+	 */
+	@SuppressWarnings("boxing")
+	public CorruptMediaFile(Path mediaFile, long expectedSize,
+			long size) {
+		super(MessageFormat.format(LfsText.get().inconsistentMediafileLength,
+				mediaFile, expectedSize, size));
+		this.mediaFile = mediaFile;
+		this.expectedSize = expectedSize;
+		this.size = size;
+	}
+
+	/**
+	 * @return the media file which seems to be corrupt
+	 */
+	public Path getMediaFile() {
+		return mediaFile;
+	}
+
+	/**
+	 * @return the expected size of the media file
+	 */
+	public long getExpectedSize() {
+		return expectedSize;
+	}
+
+	/**
+	 * @return the actual size of the media file in the file system
+	 */
+	public long getSize() {
+		return size;
+	}
+}

diff --git a/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/fs/AtomicObjectOutputStream.java b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/internal/AtomicObjectOutputStream.java
similarity index 90%
rename from org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/fs/AtomicObjectOutputStream.java
rename to org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/internal/AtomicObjectOutputStream.java
index ecc7c1f..7e050b1 100644
--- a/org.eclipse.jgit.lfs.server/src/org/eclipse/jgit/lfs/server/fs/AtomicObjectOutputStream.java
+++ b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/internal/AtomicObjectOutputStream.java

@@ -40,7 +40,7 @@
  * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
  * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  */
-package org.eclipse.jgit.lfs.server.fs;
+package org.eclipse.jgit.lfs.internal;
 
 import java.io.IOException;
 import java.io.OutputStream;
@@ -53,14 +53,13 @@
 import org.eclipse.jgit.lfs.lib.AnyLongObjectId;
 import org.eclipse.jgit.lfs.lib.Constants;
 import org.eclipse.jgit.lfs.lib.LongObjectId;
-import org.eclipse.jgit.lfs.server.internal.LfsServerText;
 
 /**
  * Output stream writing content to a {@link LockFile} which is committed on
  * close(). The stream checks if the hash of the stream content matches the
  * id.
  */
-class AtomicObjectOutputStream extends OutputStream {
+public class AtomicObjectOutputStream extends OutputStream {
 
 	private LockFile locked;
 
@@ -70,7 +69,12 @@ class AtomicObjectOutputStream extends OutputStream {
 
 	private AnyLongObjectId id;
 
-	AtomicObjectOutputStream(Path path, AnyLongObjectId id)
+	/**
+	 * @param path
+	 * @param id
+	 * @throws IOException
+	 */
+	public AtomicObjectOutputStream(Path path, AnyLongObjectId id)
 			throws IOException {
 		locked = new LockFile(path.toFile());
 		locked.lock();
@@ -109,12 +113,15 @@ private void verifyHash() {
 		if (!contentHash.equals(id)) {
 			abort();
 			throw new CorruptLongObjectException(id, contentHash,
-					MessageFormat.format(LfsServerText.get().corruptLongObject,
+					MessageFormat.format(LfsText.get().corruptLongObject,
 							contentHash, id));
 		}
 	}
 
-	void abort() {
+	/**
+	 * Aborts the stream. Temporary file will be deleted
+	 */
+	public void abort() {
 		locked.unlock();
 		aborted = true;
 	}

diff --git a/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/internal/LfsText.java b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/internal/LfsText.java
index 365eaa1..c76df39 100644
--- a/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/internal/LfsText.java
+++ b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/internal/LfsText.java

@@ -58,6 +58,8 @@ public static LfsText get() {
 	}
 
 	// @formatter:off
+	/***/ public String corruptLongObject;
+	/***/ public String inconsistentMediafileLength;
 	/***/ public String incorrectLONG_OBJECT_ID_LENGTH;
 	/***/ public String invalidLongId;
 	/***/ public String invalidLongIdLength;

diff --git a/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/lib/Constants.java b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/lib/Constants.java
index d246412..20e87ae 100644
--- a/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/lib/Constants.java
+++ b/org.eclipse.jgit.lfs/src/org/eclipse/jgit/lfs/lib/Constants.java

@@ -55,8 +55,19 @@
  **/
 @SuppressWarnings("nls")
 public final class Constants {
-	/** Hash function used natively by Git LFS extension for large objects. */
-	private static final String LONG_HASH_FUNCTION = "SHA-256";
+	/**
+	 * lfs folder
+	 *
+	 * @since 4.6
+	 */
+	public static final String LFS = "lfs";
+
+	/**
+	 * Hash function used natively by Git LFS extension for large objects.
+	 *
+	 * @since 4.6
+	 */
+	public static final String LONG_HASH_FUNCTION = "SHA-256";
 
 	/**
 	 * A Git LFS large object hash is 256 bits, i.e. 32 bytes.

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.feature/feature.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.feature/feature.xml
index 091073c..75573d7 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.feature/feature.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.feature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="org.eclipse.jgit"
       label="%featureName"
-      version="4.5.1.qualifier"
+      version="4.6.0.qualifier"
       provider-name="%providerName">
 
    <description url="http://www.eclipse.org/jgit/">

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.feature/pom.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.feature/pom.xml
index c559f8e..8a7d70a 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.feature/pom.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.feature/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>jgit.tycho.parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <groupId>org.eclipse.jgit.feature</groupId>

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.http.apache.feature/feature.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.http.apache.feature/feature.xml
index 9a327b8..0233f2a 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.http.apache.feature/feature.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.http.apache.feature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="org.eclipse.jgit.http.apache"
       label="%featureName"
-      version="4.5.1.qualifier"
+      version="4.6.0.qualifier"
       provider-name="%providerName">
 
    <description url="http://www.eclipse.org/jgit/">

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.http.apache.feature/pom.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.http.apache.feature/pom.xml
index 8812d8c..5ebee12 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.http.apache.feature/pom.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.http.apache.feature/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>jgit.tycho.parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <groupId>org.eclipse.jgit.feature</groupId>

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.junit.feature/feature.properties b/org.eclipse.jgit.packaging/org.eclipse.jgit.junit.feature/feature.properties
index 9ef46ba..4450bbb 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.junit.feature/feature.properties
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.junit.feature/feature.properties

@@ -9,14 +9,13 @@
 #
 ###############################################################################
 
-featureName=JUnit test support for Java implementation of Git
+featureName=Java implementation of Git - JUnit test support
 providerName=Eclipse JGit
 
 updateSiteName=Eclipse JGit Update Site
 
 # description property - text of the "Feature Description"
-description=\
-JUnit test support for JGit.\n
+description=JUnit test support for JGit
 ################ end of description property ##################################
 
 # "copyright" property - text of the "Feature Update Copyright"

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.junit.feature/feature.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.junit.feature/feature.xml
index d96081e..45c320e 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.junit.feature/feature.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.junit.feature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="org.eclipse.jgit.junit"
       label="%featureName"
-      version="4.5.1.qualifier"
+      version="4.6.0.qualifier"
       provider-name="%providerName">
 
    <description url="http://www.eclipse.org/jgit/">

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.junit.feature/pom.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.junit.feature/pom.xml
index 82e6045..9db144c 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.junit.feature/pom.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.junit.feature/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>jgit.tycho.parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <groupId>org.eclipse.jgit.feature</groupId>

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.lfs.feature/feature.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.lfs.feature/feature.xml
index c19f7cd..47a09d2 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.lfs.feature/feature.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.lfs.feature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="org.eclipse.jgit.lfs"
       label="%featureName"
-      version="4.5.1.qualifier"
+      version="4.6.0.qualifier"
       provider-name="%providerName">
 
    <description url="http://www.eclipse.org/jgit/">

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.lfs.feature/pom.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.lfs.feature/pom.xml
index dc9b60d..b3379f8 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.lfs.feature/pom.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.lfs.feature/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>jgit.tycho.parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <groupId>org.eclipse.jgit.feature</groupId>

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.feature/feature.properties b/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.feature/feature.properties
index 1d1130a..8992ad3 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.feature/feature.properties
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.feature/feature.properties

@@ -8,14 +8,14 @@
 #
 ###############################################################################
 
-featureName=Command Line Interface for Java implementation of Git
+featureName=Java implementation of Git - Command Line Interface
 providerName=Eclipse JGit
 
 updateSiteName=Eclipse JGit Update Site
 
 # description property - text of the "Feature Description"
 description=\
-Command line interface for a pure Java implementation of the Git version control system.\n
+Command line interface for a pure Java implementation of the Git version control system
 ################ end of description property ##################################
 
 # "copyright" property - text of the "Feature Update Copyright"

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.feature/feature.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.feature/feature.xml
index 04c47ee..1f69a51 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.feature/feature.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.feature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="org.eclipse.jgit.pgm"
       label="%featureName"
-      version="4.5.1.qualifier"
+      version="4.6.0.qualifier"
       provider-name="%providerName">
 
    <description url="http://www.eclipse.org/jgit/">
@@ -31,8 +31,8 @@
          version="0.0.0"/>
 
    <requires>
-      <import feature="org.eclipse.jgit" version="4.5.0" match="equivalent"/>
-      <import feature="org.eclipse.jgit.lfs" version="4.5.0" match="equivalent"/>
+      <import feature="org.eclipse.jgit" version="4.6.0" match="equivalent"/>
+      <import feature="org.eclipse.jgit.lfs" version="4.6.0" match="equivalent"/>
    </requires>
 
    <plugin

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.feature/pom.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.feature/pom.xml
index 3fe17a7..d00064e 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.feature/pom.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.feature/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>jgit.tycho.parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <groupId>org.eclipse.jgit.feature</groupId>

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.source.feature/feature.properties b/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.source.feature/feature.properties
index 20d6641..012c217 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.source.feature/feature.properties
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.source.feature/feature.properties

@@ -8,7 +8,7 @@
 #
 ###############################################################################
 
-featureName=Command Line Interface for Java implementation of Git - Source Code
+featureName=Java implementation of Git - Command Line Interface - Source Code
 providerName=Eclipse JGit
 
 updateSiteName=Eclipse JGit Update Site

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.source.feature/feature.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.source.feature/feature.xml
index 3696886..8584ee1 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.source.feature/feature.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.source.feature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="org.eclipse.jgit.pgm.source"
       label="%featureName"
-      version="4.5.1.qualifier"
+      version="4.6.0.qualifier"
       provider-name="%providerName">
 
    <description url="http://www.eclipse.org/jgit/">

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.source.feature/pom.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.source.feature/pom.xml
index e3dab5f..d5e1168 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.source.feature/pom.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.pgm.source.feature/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>jgit.tycho.parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <groupId>org.eclipse.jgit.feature</groupId>

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.repository/category.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.repository/category.xml
index 15d10e6..0149029 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.repository/category.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.repository/category.xml

@@ -24,9 +24,9 @@
    <feature url="features/org.eclipse.jgit.lfs_0.0.0.qualifier.jar" id="org.eclipse.jgit.lfs" version="0.0.0">
       <category name="JGit"/>
    </feature>
-   <category-def name="JGit" label="JGit">
+   <category-def name="JGit" label="Java implementation of Git">
       <description>
-         JGit
+         Java implementation of Git
       </description>
    </category-def>
 </site>

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.repository/pom.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.repository/pom.xml
index b9d9f54..e441fce 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.repository/pom.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.repository/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>jgit.tycho.parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.repository</artifactId>

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.source.feature/feature.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.source.feature/feature.xml
index 90b4c3d..c2fb82e 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.source.feature/feature.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.source.feature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="org.eclipse.jgit.source"
       label="%featureName"
-      version="4.5.1.qualifier"
+      version="4.6.0.qualifier"
       provider-name="%providerName">
 
    <description url="http://www.eclipse.org/jgit/">

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.source.feature/pom.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.source.feature/pom.xml
index 69b68df..3e3add4 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.source.feature/pom.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.source.feature/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>jgit.tycho.parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <groupId>org.eclipse.jgit.feature</groupId>

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.target/.classpath b/org.eclipse.jgit.packaging/org.eclipse.jgit.target/.classpath
index 098194c..eca7bdb 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.target/.classpath
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.target/.classpath

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="output" path="bin"/>

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.target/META-INF/MANIFEST.MF b/org.eclipse.jgit.packaging/org.eclipse.jgit.target/META-INF/MANIFEST.MF
index d25905c..6854007 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.target/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.target/META-INF/MANIFEST.MF

@@ -2,4 +2,4 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: JGit Target Platform Bundle
 Bundle-SymbolicName: org.eclipse.jgit.target
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier

diff --git a/org.eclipse.jgit.packaging/org.eclipse.jgit.target/pom.xml b/org.eclipse.jgit.packaging/org.eclipse.jgit.target/pom.xml
index 5b79034..fc33622 100644
--- a/org.eclipse.jgit.packaging/org.eclipse.jgit.target/pom.xml
+++ b/org.eclipse.jgit.packaging/org.eclipse.jgit.target/pom.xml

@@ -49,7 +49,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>jgit.tycho.parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.target</artifactId>

diff --git a/org.eclipse.jgit.packaging/pom.xml b/org.eclipse.jgit.packaging/pom.xml
index 50b11ac..cf4d740 100644
--- a/org.eclipse.jgit.packaging/pom.xml
+++ b/org.eclipse.jgit.packaging/pom.xml

@@ -53,7 +53,7 @@
 
   <groupId>org.eclipse.jgit</groupId>
   <artifactId>jgit.tycho.parent</artifactId>
-  <version>4.5.1-SNAPSHOT</version>
+  <version>4.6.0-SNAPSHOT</version>
   <packaging>pom</packaging>
 
   <name>JGit Tycho Parent</name>
@@ -142,8 +142,8 @@
           <version>${tycho-version}</version>
           <configuration>
             <encoding>UTF-8</encoding>
-            <source>1.7</source>
-            <target>1.7</target>
+            <source>1.8</source>
+            <target>1.8</target>
           </configuration>
         </plugin>
         <plugin>

diff --git a/org.eclipse.jgit.pgm.test/.classpath b/org.eclipse.jgit.pgm.test/.classpath
index 30d83d8..b26f4c4 100644
--- a/org.eclipse.jgit.pgm.test/.classpath
+++ b/org.eclipse.jgit.pgm.test/.classpath

@@ -2,7 +2,7 @@
 <classpath>
 	<classpathentry kind="src" path="tst"/>
 	<classpathentry kind="src" path="src"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="output" path="bin"/>
 </classpath>

diff --git a/org.eclipse.jgit.pgm.test/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.pgm.test/.settings/org.eclipse.jdt.core.prefs
index 87210fb..10c29d5 100644
--- a/org.eclipse.jgit.pgm.test/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.pgm.test/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.pgm.test/META-INF/MANIFEST.MF b/org.eclipse.jgit.pgm.test/META-INF/MANIFEST.MF
index 77d441b..45e3692 100644
--- a/org.eclipse.jgit.pgm.test/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.pgm.test/META-INF/MANIFEST.MF

@@ -2,28 +2,28 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.pgm.test
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Vendor: %provider_name
 Bundle-Localization: plugin
 Bundle-ActivationPolicy: lazy
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
-Import-Package: org.eclipse.jgit.api;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.api.errors;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.diff;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.dircache;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.file;version="4.5.1",
- org.eclipse.jgit.junit;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.merge;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.pgm;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.pgm.internal;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.pgm.opt;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.revwalk;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.treewalk;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util.io;version="[4.5.1,4.6.0)",
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
+Import-Package: org.eclipse.jgit.api;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.api.errors;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.diff;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.dircache;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.file;version="4.6.0",
+ org.eclipse.jgit.junit;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.merge;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.pgm;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.pgm.internal;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.pgm.opt;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.revwalk;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.treewalk;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util.io;version="[4.6.0,4.7.0)",
  org.hamcrest.core;bundle-version="[1.1.0,2.0.0)",
  org.junit;version="[4.11.0,5.0.0)",
  org.junit.rules;version="[4.11.0,5.0.0)",

diff --git "a/org.eclipse.jgit.pgm.test/org.eclipse.jgit.pgm--All-Tests \050Java7\051.launch" "b/org.eclipse.jgit.pgm.test/org.eclipse.jgit.pgm--All-Tests \050Java7\051.launch"
deleted file mode 100644
index 3df0dcb..0000000
--- "a/org.eclipse.jgit.pgm.test/org.eclipse.jgit.pgm--All-Tests \050Java7\051.launch"
+++ /dev/null

@@ -1,21 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<launchConfiguration type="org.eclipse.jdt.junit.launchconfig">
-<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/org.eclipse.jgit.pgm.test/tst"/>
-</listAttribute>
-<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
-<listEntry value="2"/>
-</listAttribute>
-<booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<listAttribute key="org.eclipse.debug.ui.favoriteGroups">
-<listEntry value="org.eclipse.debug.ui.launchGroup.debug"/>
-<listEntry value="org.eclipse.debug.ui.launchGroup.run"/>
-</listAttribute>
-<stringAttribute key="org.eclipse.jdt.junit.CONTAINER" value="=org.eclipse.jgit.pgm.test/tst"/>
-<booleanAttribute key="org.eclipse.jdt.junit.KEEPRUNNING_ATTR" value="false"/>
-<stringAttribute key="org.eclipse.jdt.junit.TESTNAME" value=""/>
-<stringAttribute key="org.eclipse.jdt.junit.TEST_KIND" value="org.eclipse.jdt.junit.loader.junit4"/>
-<stringAttribute key="org.eclipse.jdt.launching.JRE_CONTAINER" value="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value=""/>
-<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="org.eclipse.jgit.pgm.test"/>
-</launchConfiguration>

diff --git "a/org.eclipse.jgit.pgm.test/org.eclipse.jgit.pgm--All-Tests \050Java8\051 \050de\051.launch" "b/org.eclipse.jgit.pgm.test/org.eclipse.jgit.pgm--All-Tests \050Java8\051 \050de\051.launch"
index 5c137f2..e11b72f 100644
--- "a/org.eclipse.jgit.pgm.test/org.eclipse.jgit.pgm--All-Tests \050Java8\051 \050de\051.launch"
+++ "b/org.eclipse.jgit.pgm.test/org.eclipse.jgit.pgm--All-Tests \050Java8\051 \050de\051.launch"

@@ -20,7 +20,7 @@
 <stringAttribute key="org.eclipse.jdt.junit.TEST_KIND" value="org.eclipse.jdt.junit.loader.junit4"/>
 <booleanAttribute key="org.eclipse.jdt.launching.ATTR_USE_START_ON_FIRST_THREAD" value="true"/>
 <listAttribute key="org.eclipse.jdt.launching.CLASSPATH">
-<listEntry value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#10;&lt;runtimeClasspathEntry containerPath=&quot;org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7&quot; path=&quot;1&quot; type=&quot;4&quot;/&gt;&#10;"/>
+<listEntry value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#10;&lt;runtimeClasspathEntry containerPath=&quot;org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8&quot; path=&quot;1&quot; type=&quot;4&quot;/&gt;&#10;"/>
 <listEntry value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#10;&lt;runtimeClasspathEntry id=&quot;org.eclipse.jdt.launching.classpathentry.defaultClasspath&quot;&gt;&#10;&lt;memento exportedEntriesOnly=&quot;false&quot; project=&quot;org.eclipse.jgit.pgm.test&quot;/&gt;&#10;&lt;/runtimeClasspathEntry&gt;&#10;"/>
 </listAttribute>
 <booleanAttribute key="org.eclipse.jdt.launching.DEFAULT_CLASSPATH" value="false"/>

diff --git "a/org.eclipse.jgit.pgm.test/org.eclipse.jgit.pgm--All-Tests \050Java8\051.launch" "b/org.eclipse.jgit.pgm.test/org.eclipse.jgit.pgm--All-Tests \050Java8\051.launch"
index ce473ed..8b0452a 100644
--- "a/org.eclipse.jgit.pgm.test/org.eclipse.jgit.pgm--All-Tests \050Java8\051.launch"
+++ "b/org.eclipse.jgit.pgm.test/org.eclipse.jgit.pgm--All-Tests \050Java8\051.launch"

@@ -17,7 +17,7 @@
 <stringAttribute key="org.eclipse.jdt.junit.TEST_KIND" value="org.eclipse.jdt.junit.loader.junit4"/>
 <booleanAttribute key="org.eclipse.jdt.launching.ATTR_USE_START_ON_FIRST_THREAD" value="true"/>
 <listAttribute key="org.eclipse.jdt.launching.CLASSPATH">
-<listEntry value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#10;&lt;runtimeClasspathEntry containerPath=&quot;org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7&quot; path=&quot;1&quot; type=&quot;4&quot;/&gt;&#10;"/>
+<listEntry value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#10;&lt;runtimeClasspathEntry containerPath=&quot;org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8&quot; path=&quot;1&quot; type=&quot;4&quot;/&gt;&#10;"/>
 <listEntry value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#10;&lt;runtimeClasspathEntry id=&quot;org.eclipse.jdt.launching.classpathentry.defaultClasspath&quot;&gt;&#10;&lt;memento exportedEntriesOnly=&quot;false&quot; project=&quot;org.eclipse.jgit.pgm.test&quot;/&gt;&#10;&lt;/runtimeClasspathEntry&gt;&#10;"/>
 </listAttribute>
 <booleanAttribute key="org.eclipse.jdt.launching.DEFAULT_CLASSPATH" value="false"/>

diff --git a/org.eclipse.jgit.pgm.test/pom.xml b/org.eclipse.jgit.pgm.test/pom.xml
index ff9a668..f5d0bd3 100644
--- a/org.eclipse.jgit.pgm.test/pom.xml
+++ b/org.eclipse.jgit.pgm.test/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.pgm.test</artifactId>

diff --git a/org.eclipse.jgit.pgm/.classpath b/org.eclipse.jgit.pgm/.classpath
index c5d5a57..e8bc977 100644
--- a/org.eclipse.jgit.pgm/.classpath
+++ b/org.eclipse.jgit.pgm/.classpath

@@ -3,7 +3,7 @@
 	<classpathentry kind="src" path="src"/>
 	<classpathentry excluding="*|resources/|resources/" including="META-INF/" kind="src" path=""/>
 	<classpathentry kind="src" path="resources"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="output" path="bin"/>
 </classpath>

diff --git a/org.eclipse.jgit.pgm/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.pgm/.settings/org.eclipse.jdt.core.prefs
index bfaf736..4f1759f 100644
--- a/org.eclipse.jgit.pgm/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.pgm/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=enabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.pgm/BUCK b/org.eclipse.jgit.pgm/BUCK
index 47711b5..5d5e6f7 100644
--- a/org.eclipse.jgit.pgm/BUCK
+++ b/org.eclipse.jgit.pgm/BUCK

@@ -9,6 +9,7 @@
     '//org.eclipse.jgit:jgit',
     '//org.eclipse.jgit.archive:jgit-archive',
     '//org.eclipse.jgit.http.apache:http-apache',
+    '//org.eclipse.jgit.lfs:jgit-lfs',
     '//org.eclipse.jgit.lfs.server:jgit-lfs-server',
     '//org.eclipse.jgit.ui:ui',
     '//lib:args4j',

diff --git a/org.eclipse.jgit.pgm/META-INF/MANIFEST.MF b/org.eclipse.jgit.pgm/META-INF/MANIFEST.MF
index c3599bf..ad400b3 100644
--- a/org.eclipse.jgit.pgm/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.pgm/META-INF/MANIFEST.MF

@@ -2,11 +2,11 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.pgm
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Vendor: %provider_name
 Bundle-ActivationPolicy: lazy
 Bundle-Localization: plugin
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Import-Package: javax.servlet;version="[3.1.0,4.0.0)",
  javax.servlet.http;version="[3.1.0,4.0.0)",
  org.apache.commons.compress.archivers;version="[1.3,2.0)",
@@ -26,45 +26,46 @@
  org.eclipse.jetty.util.log;version="[9.0.0,10.0.0)",
  org.eclipse.jetty.util.security;version="[9.0.0,10.0.0)",
  org.eclipse.jetty.util.thread;version="[9.0.0,10.0.0)",
- org.eclipse.jgit.api;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.api.errors;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.archive;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.awtui;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.blame;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.diff;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.dircache;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.errors;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.gitrepo;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.ketch;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.pack;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.reftree;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lfs.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lfs.server;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lfs.server.fs;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lfs.server.s3;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.merge;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.nls;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.notes;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.revplot;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.revwalk;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.revwalk.filter;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.storage.pack;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport.http.apache;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport.resolver;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.treewalk;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.treewalk.filter;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util.io;version="[4.5.1,4.6.0)",
+ org.eclipse.jgit.api;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.api.errors;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.archive;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.awtui;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.blame;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.diff;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.dircache;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.errors;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.gitrepo;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.ketch;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.pack;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.reftree;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs.server;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs.server.fs;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs.server.s3;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.merge;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.nls;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.notes;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.revplot;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.revwalk;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.revwalk.filter;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.storage.pack;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport.http.apache;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport.resolver;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.treewalk;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.treewalk.filter;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util.io;version="[4.6.0,4.7.0)",
  org.kohsuke.args4j;version="[2.0.12,2.1.0)",
  org.kohsuke.args4j.spi;version="[2.0.15,2.1.0)"
-Export-Package: org.eclipse.jgit.console;version="4.5.1";
+Export-Package: org.eclipse.jgit.console;version="4.6.0";
   uses:="org.eclipse.jgit.transport,
    org.eclipse.jgit.util",
- org.eclipse.jgit.pgm;version="4.5.1";
+ org.eclipse.jgit.pgm;version="4.6.0";
   uses:="org.eclipse.jgit.revwalk,
    org.eclipse.jgit.treewalk.filter,
    org.eclipse.jgit.pgm.opt,
@@ -75,11 +76,11 @@
    org.eclipse.jgit.treewalk,
    javax.swing,
    org.eclipse.jgit.transport",
- org.eclipse.jgit.pgm.debug;version="4.5.1";
+ org.eclipse.jgit.pgm.debug;version="4.6.0";
   uses:="org.eclipse.jgit.util.io,
    org.eclipse.jgit.pgm",
- org.eclipse.jgit.pgm.internal;version="4.5.1";x-friends:="org.eclipse.jgit.pgm.test,org.eclipse.jgit.test",
- org.eclipse.jgit.pgm.opt;version="4.5.1";
+ org.eclipse.jgit.pgm.internal;version="4.6.0";x-friends:="org.eclipse.jgit.pgm.test,org.eclipse.jgit.test",
+ org.eclipse.jgit.pgm.opt;version="4.6.0";
   uses:="org.eclipse.jgit.lib,
    org.eclipse.jgit.revwalk,
    org.kohsuke.args4j.spi,

diff --git a/org.eclipse.jgit.pgm/META-INF/SOURCE-MANIFEST.MF b/org.eclipse.jgit.pgm/META-INF/SOURCE-MANIFEST.MF
index e6809c2..3378a8c 100644
--- a/org.eclipse.jgit.pgm/META-INF/SOURCE-MANIFEST.MF
+++ b/org.eclipse.jgit.pgm/META-INF/SOURCE-MANIFEST.MF

@@ -3,5 +3,5 @@
 Bundle-Name: org.eclipse.jgit.pgm - Sources
 Bundle-SymbolicName: org.eclipse.jgit.pgm.source
 Bundle-Vendor: Eclipse.org - JGit
-Bundle-Version: 4.5.1.qualifier
-Eclipse-SourceBundle: org.eclipse.jgit.pgm;version="4.5.1.qualifier";roots="."
+Bundle-Version: 4.6.0.qualifier
+Eclipse-SourceBundle: org.eclipse.jgit.pgm;version="4.6.0.qualifier";roots="."

diff --git a/org.eclipse.jgit.pgm/pom.xml b/org.eclipse.jgit.pgm/pom.xml
index 99945ab..61979c8 100644
--- a/org.eclipse.jgit.pgm/pom.xml
+++ b/org.eclipse.jgit.pgm/pom.xml

@@ -50,7 +50,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.pgm</artifactId>

diff --git a/org.eclipse.jgit.pgm/src/org/eclipse/jgit/pgm/Main.java b/org.eclipse.jgit.pgm/src/org/eclipse/jgit/pgm/Main.java
index d701f22..3ddee36 100644
--- a/org.eclipse.jgit.pgm/src/org/eclipse/jgit/pgm/Main.java
+++ b/org.eclipse.jgit.pgm/src/org/eclipse/jgit/pgm/Main.java

@@ -57,6 +57,8 @@
 import org.eclipse.jgit.awtui.AwtAuthenticator;
 import org.eclipse.jgit.awtui.AwtCredentialsProvider;
 import org.eclipse.jgit.errors.TransportException;
+import org.eclipse.jgit.lfs.CleanFilter;
+import org.eclipse.jgit.lfs.SmudgeFilter;
 import org.eclipse.jgit.lib.Repository;
 import org.eclipse.jgit.lib.RepositoryBuilder;
 import org.eclipse.jgit.pgm.internal.CLIText;
@@ -97,6 +99,8 @@ public class Main {
 	 */
 	public Main() {
 		HttpTransport.setConnectionFactory(new HttpClientConnectionFactory());
+		CleanFilter.register();
+		SmudgeFilter.register();
 	}
 
 	/**

diff --git a/org.eclipse.jgit.test/.classpath b/org.eclipse.jgit.test/.classpath
index 8b81bf5..84b5052 100644
--- a/org.eclipse.jgit.test/.classpath
+++ b/org.eclipse.jgit.test/.classpath

@@ -4,7 +4,7 @@
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="src" path="tst-rsrc"/>
 	<classpathentry kind="src" path="exttst"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="output" path="bin"/>
 </classpath>

diff --git a/org.eclipse.jgit.test/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.test/.settings/org.eclipse.jdt.core.prefs
index 87210fb..10c29d5 100644
--- a/org.eclipse.jgit.test/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.test/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.test/BUCK b/org.eclipse.jgit.test/BUCK
index 3df3336..e4cd47c 100644
--- a/org.eclipse.jgit.test/BUCK
+++ b/org.eclipse.jgit.test/BUCK

@@ -60,6 +60,7 @@
       ':tst_rsrc',
       '//org.eclipse.jgit:jgit',
       '//org.eclipse.jgit.junit:junit',
+      '//org.eclipse.jgit.lfs:jgit-lfs',
       '//lib:hamcrest-core',
       '//lib:hamcrest-library',
       '//lib:javaewah',

diff --git a/org.eclipse.jgit.test/META-INF/MANIFEST.MF b/org.eclipse.jgit.test/META-INF/MANIFEST.MF
index 63fad8c..80d9e23 100644
--- a/org.eclipse.jgit.test/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.test/META-INF/MANIFEST.MF

@@ -2,52 +2,53 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.test
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Localization: plugin
 Bundle-Vendor: %provider_name
 Bundle-ActivationPolicy: lazy
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Import-Package: com.googlecode.javaewah;version="[0.7.9,0.8.0)",
- org.eclipse.jgit.api;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.api.errors;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.attributes;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.awtui;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.blame;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.diff;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.dircache;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.errors;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.events;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.fnmatch;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.gitrepo;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.hooks;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.ignore;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.ignore.internal;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.dfs;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.pack;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.internal.storage.reftree;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.junit;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.merge;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.nls;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.notes;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.patch;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.pgm;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.pgm.internal;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.revplot;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.revwalk;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.revwalk.filter;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.storage.file;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.storage.pack;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.submodule;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport.http;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport.resolver;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.treewalk;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.treewalk.filter;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util.io;version="[4.5.1,4.6.0)",
+ org.eclipse.jgit.api;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.api.errors;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.attributes;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.awtui;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.blame;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.diff;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.dircache;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.errors;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.events;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.fnmatch;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.gitrepo;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.hooks;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.ignore;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.ignore.internal;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.dfs;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.pack;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.internal.storage.reftree;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.junit;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lfs;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.merge;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.nls;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.notes;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.patch;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.pgm;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.pgm.internal;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.revplot;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.revwalk;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.revwalk.filter;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.storage.file;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.storage.pack;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.submodule;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport.http;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport.resolver;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.treewalk;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.treewalk.filter;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util.io;version="[4.6.0,4.7.0)",
  org.hamcrest;version="[1.1.0,2.0.0)",
  org.junit;version="[4.4.0,5.0.0)",
  org.junit.experimental.theories;version="[4.4.0,5.0.0)",

diff --git "a/org.eclipse.jgit.test/org.eclipse.jgit.core--All-External-Tests \050Java 6\051.launch" "b/org.eclipse.jgit.test/org.eclipse.jgit.core--All-External-Tests \050Java 6\051.launch"
deleted file mode 100644
index db13a84..0000000
--- "a/org.eclipse.jgit.test/org.eclipse.jgit.core--All-External-Tests \050Java 6\051.launch"
+++ /dev/null

@@ -1,21 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<launchConfiguration type="org.eclipse.jdt.junit.launchconfig">
-<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/org.eclipse.jgit.test/exttst"/>
-</listAttribute>
-<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
-<listEntry value="2"/>
-</listAttribute>
-<booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<listAttribute key="org.eclipse.debug.ui.favoriteGroups">
-<listEntry value="org.eclipse.debug.ui.launchGroup.debug"/>
-<listEntry value="org.eclipse.debug.ui.launchGroup.run"/>
-</listAttribute>
-<stringAttribute key="org.eclipse.jdt.junit.CONTAINER" value="=org.eclipse.jgit.test/exttst"/>
-<booleanAttribute key="org.eclipse.jdt.junit.KEEPRUNNING_ATTR" value="false"/>
-<stringAttribute key="org.eclipse.jdt.junit.TESTNAME" value=""/>
-<stringAttribute key="org.eclipse.jdt.junit.TEST_KIND" value="org.eclipse.jdt.junit.loader.junit4"/>
-<stringAttribute key="org.eclipse.jdt.launching.JRE_CONTAINER" value="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value=""/>
-<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="org.eclipse.jgit.test"/>
-</launchConfiguration>

diff --git a/org.eclipse.jgit.test/org.eclipse.jgit.core--All-External-Tests.launch b/org.eclipse.jgit.test/org.eclipse.jgit.core--All-External-Tests.launch
deleted file mode 100644
index 2adb02c..0000000
--- a/org.eclipse.jgit.test/org.eclipse.jgit.core--All-External-Tests.launch
+++ /dev/null

@@ -1,20 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<launchConfiguration type="org.eclipse.jdt.junit.launchconfig">
-<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/org.eclipse.jgit.test/exttst"/>
-</listAttribute>
-<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
-<listEntry value="2"/>
-</listAttribute>
-<booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<listAttribute key="org.eclipse.debug.ui.favoriteGroups">
-<listEntry value="org.eclipse.debug.ui.launchGroup.debug"/>
-<listEntry value="org.eclipse.debug.ui.launchGroup.run"/>
-</listAttribute>
-<stringAttribute key="org.eclipse.jdt.junit.CONTAINER" value="=org.eclipse.jgit.test/exttst"/>
-<booleanAttribute key="org.eclipse.jdt.junit.KEEPRUNNING_ATTR" value="false"/>
-<stringAttribute key="org.eclipse.jdt.junit.TESTNAME" value=""/>
-<stringAttribute key="org.eclipse.jdt.junit.TEST_KIND" value="org.eclipse.jdt.junit.loader.junit4"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value=""/>
-<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="org.eclipse.jgit.test"/>
-</launchConfiguration>

diff --git "a/org.eclipse.jgit.test/org.eclipse.jgit.core--All-Tests \050Java 6\051.launch" "b/org.eclipse.jgit.test/org.eclipse.jgit.core--All-Tests \050Java 6\051.launch"
deleted file mode 100644
index f253d59..0000000
--- "a/org.eclipse.jgit.test/org.eclipse.jgit.core--All-Tests \050Java 6\051.launch"
+++ /dev/null

@@ -1,22 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<launchConfiguration type="org.eclipse.jdt.junit.launchconfig">
-<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/org.eclipse.jgit.test/tst"/>
-</listAttribute>
-<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
-<listEntry value="2"/>
-</listAttribute>
-<booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<listAttribute key="org.eclipse.debug.ui.favoriteGroups">
-<listEntry value="org.eclipse.debug.ui.launchGroup.debug"/>
-<listEntry value="org.eclipse.debug.ui.launchGroup.run"/>
-</listAttribute>
-<stringAttribute key="org.eclipse.jdt.junit.CONTAINER" value="=org.eclipse.jgit.test/tst"/>
-<booleanAttribute key="org.eclipse.jdt.junit.KEEPRUNNING_ATTR" value="false"/>
-<stringAttribute key="org.eclipse.jdt.junit.TESTNAME" value=""/>
-<stringAttribute key="org.eclipse.jdt.junit.TEST_KIND" value="org.eclipse.jdt.junit.loader.junit4"/>
-<stringAttribute key="org.eclipse.jdt.launching.JRE_CONTAINER" value="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value=""/>
-<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="org.eclipse.jgit.test"/>
-<stringAttribute key="org.eclipse.jdt.launching.VM_ARGUMENTS" value="-Xmx256m"/>
-</launchConfiguration>

diff --git "a/org.eclipse.jgit.test/org.eclipse.jgit.core--All-Tests \050Java 7\051 \050de\051.launch" "b/org.eclipse.jgit.test/org.eclipse.jgit.core--All-Tests \050Java 7\051 \050de\051.launch"
deleted file mode 100644
index 86446f9..0000000
--- "a/org.eclipse.jgit.test/org.eclipse.jgit.core--All-Tests \050Java 7\051 \050de\051.launch"
+++ /dev/null

@@ -1,30 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<launchConfiguration type="org.eclipse.jdt.junit.launchconfig">
-<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/org.eclipse.jgit.test/tst"/>
-</listAttribute>
-<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
-<listEntry value="2"/>
-</listAttribute>
-<booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<mapAttribute key="org.eclipse.debug.core.environmentVariables">
-<mapEntry key="LANG" value="de_DE.UTF-8"/>
-</mapAttribute>
-<listAttribute key="org.eclipse.debug.ui.favoriteGroups">
-<listEntry value="org.eclipse.debug.ui.launchGroup.debug"/>
-<listEntry value="org.eclipse.debug.ui.launchGroup.run"/>
-</listAttribute>
-<stringAttribute key="org.eclipse.jdt.junit.CONTAINER" value="=org.eclipse.jgit.test/tst"/>
-<booleanAttribute key="org.eclipse.jdt.junit.KEEPRUNNING_ATTR" value="false"/>
-<stringAttribute key="org.eclipse.jdt.junit.TESTNAME" value=""/>
-<stringAttribute key="org.eclipse.jdt.junit.TEST_KIND" value="org.eclipse.jdt.junit.loader.junit4"/>
-<listAttribute key="org.eclipse.jdt.launching.CLASSPATH">
-<listEntry value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#10;&lt;runtimeClasspathEntry containerPath=&quot;org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6&quot; path=&quot;1&quot; type=&quot;4&quot;/&gt;&#10;"/>
-<listEntry value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#10;&lt;runtimeClasspathEntry id=&quot;org.eclipse.jdt.launching.classpathentry.defaultClasspath&quot;&gt;&#10;&lt;memento exportedEntriesOnly=&quot;false&quot; project=&quot;org.eclipse.jgit.test&quot;/&gt;&#10;&lt;/runtimeClasspathEntry&gt;&#10;"/>
-</listAttribute>
-<booleanAttribute key="org.eclipse.jdt.launching.DEFAULT_CLASSPATH" value="false"/>
-<stringAttribute key="org.eclipse.jdt.launching.JRE_CONTAINER" value="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value=""/>
-<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="org.eclipse.jgit.test"/>
-<stringAttribute key="org.eclipse.jdt.launching.VM_ARGUMENTS" value="-Xmx256m"/>
-</launchConfiguration>

diff --git "a/org.eclipse.jgit.test/org.eclipse.jgit.core--All-Tests \050Java 7\051.launch" "b/org.eclipse.jgit.test/org.eclipse.jgit.core--All-Tests \050Java 7\051.launch"
deleted file mode 100644
index a83fabb..0000000
--- "a/org.eclipse.jgit.test/org.eclipse.jgit.core--All-Tests \050Java 7\051.launch"
+++ /dev/null

@@ -1,27 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<launchConfiguration type="org.eclipse.jdt.junit.launchconfig">
-<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
-<listEntry value="/org.eclipse.jgit.test/tst"/>
-</listAttribute>
-<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
-<listEntry value="2"/>
-</listAttribute>
-<booleanAttribute key="org.eclipse.debug.core.appendEnvironmentVariables" value="true"/>
-<listAttribute key="org.eclipse.debug.ui.favoriteGroups">
-<listEntry value="org.eclipse.debug.ui.launchGroup.debug"/>
-<listEntry value="org.eclipse.debug.ui.launchGroup.run"/>
-</listAttribute>
-<stringAttribute key="org.eclipse.jdt.junit.CONTAINER" value="=org.eclipse.jgit.test/tst"/>
-<booleanAttribute key="org.eclipse.jdt.junit.KEEPRUNNING_ATTR" value="false"/>
-<stringAttribute key="org.eclipse.jdt.junit.TESTNAME" value=""/>
-<stringAttribute key="org.eclipse.jdt.junit.TEST_KIND" value="org.eclipse.jdt.junit.loader.junit4"/>
-<listAttribute key="org.eclipse.jdt.launching.CLASSPATH">
-<listEntry value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#10;&lt;runtimeClasspathEntry containerPath=&quot;org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6&quot; path=&quot;1&quot; type=&quot;4&quot;/&gt;&#10;"/>
-<listEntry value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#10;&lt;runtimeClasspathEntry id=&quot;org.eclipse.jdt.launching.classpathentry.defaultClasspath&quot;&gt;&#10;&lt;memento exportedEntriesOnly=&quot;false&quot; project=&quot;org.eclipse.jgit.test&quot;/&gt;&#10;&lt;/runtimeClasspathEntry&gt;&#10;"/>
-</listAttribute>
-<booleanAttribute key="org.eclipse.jdt.launching.DEFAULT_CLASSPATH" value="false"/>
-<stringAttribute key="org.eclipse.jdt.launching.JRE_CONTAINER" value="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
-<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value=""/>
-<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="org.eclipse.jgit.test"/>
-<stringAttribute key="org.eclipse.jdt.launching.VM_ARGUMENTS" value="-Xmx256m"/>
-</launchConfiguration>

diff --git a/org.eclipse.jgit.test/pom.xml b/org.eclipse.jgit.test/pom.xml
index da7d86f..5c358b1 100644
--- a/org.eclipse.jgit.test/pom.xml
+++ b/org.eclipse.jgit.test/pom.xml

@@ -52,7 +52,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.test</artifactId>

diff --git a/org.eclipse.jgit.test/tst-rsrc/org/eclipse/jgit/indexdiff/filerepo.txt b/org.eclipse.jgit.test/tst-rsrc/org/eclipse/jgit/indexdiff/filerepo.txt
new file mode 100644
index 0000000..3255efb
--- /dev/null
+++ b/org.eclipse.jgit.test/tst-rsrc/org/eclipse/jgit/indexdiff/filerepo.txt

@@ -0,0 +1,30 @@
+blob
+mark :1
+data 10
+äéü.txt
+blob
+mark :2
+data 8
+test.txt
+blob
+mark :3
+data 5
+Test
+
+blob
+mark :4
+data 7
+äéü
+
+reset refs/heads/master
+commit refs/heads/master
+mark :5
+author A U Thor <author@example.com> 1450727513 +0100
+committer A U Thor <author@example.com> 1450727513 +0100
+data 26
+Initial commit with links
+M 120000 :1 testfolder/aeu.txt
+M 120000 :2 testfolder/link.txt
+M 100644 :3 testfolder/test.txt
+M 100644 :4 testfolder/äéü.txt
+

diff --git a/org.eclipse.jgit.test/tst/org/eclipse/jgit/api/AddCommandTest.java b/org.eclipse.jgit.test/tst/org/eclipse/jgit/api/AddCommandTest.java
index 42601aa..5ad73f1 100644
--- a/org.eclipse.jgit.test/tst/org/eclipse/jgit/api/AddCommandTest.java
+++ b/org.eclipse.jgit.test/tst/org/eclipse/jgit/api/AddCommandTest.java

@@ -57,12 +57,21 @@
 import org.eclipse.jgit.api.errors.FilterFailedException;
 import org.eclipse.jgit.api.errors.GitAPIException;
 import org.eclipse.jgit.api.errors.NoFilepatternException;
+import org.eclipse.jgit.attributes.FilterCommandRegistry;
 import org.eclipse.jgit.dircache.DirCache;
 import org.eclipse.jgit.dircache.DirCacheBuilder;
 import org.eclipse.jgit.dircache.DirCacheEntry;
 import org.eclipse.jgit.junit.JGitTestUtil;
 import org.eclipse.jgit.junit.RepositoryTestCase;
-import org.eclipse.jgit.lib.*;
+import org.eclipse.jgit.lfs.CleanFilter;
+import org.eclipse.jgit.lfs.SmudgeFilter;
+import org.eclipse.jgit.lib.ConfigConstants;
+import org.eclipse.jgit.lib.Constants;
+import org.eclipse.jgit.lib.FileMode;
+import org.eclipse.jgit.lib.ObjectId;
+import org.eclipse.jgit.lib.ObjectInserter;
+import org.eclipse.jgit.lib.Repository;
+import org.eclipse.jgit.lib.StoredConfig;
 import org.eclipse.jgit.revwalk.RevCommit;
 import org.eclipse.jgit.storage.file.FileRepositoryBuilder;
 import org.eclipse.jgit.treewalk.TreeWalk;
@@ -70,8 +79,23 @@
 import org.eclipse.jgit.util.FS;
 import org.eclipse.jgit.util.FileUtils;
 import org.junit.Test;
+import org.junit.experimental.theories.DataPoints;
+import org.junit.experimental.theories.Theories;
+import org.junit.experimental.theories.Theory;
+import org.junit.runner.RunWith;
 
+@RunWith(Theories.class)
 public class AddCommandTest extends RepositoryTestCase {
+	@DataPoints
+	public static boolean[] sleepBeforeAddOptions = { true, false };
+
+
+	@Override
+	public void setUp() throws Exception {
+		CleanFilter.register();
+		SmudgeFilter.register();
+		super.setUp();
+	}
 
 	@Test
 	public void testAddNothing() throws GitAPIException {
@@ -110,8 +134,7 @@ public void testAddExistingSingleFile() throws IOException, GitAPIException {
 	}
 
 	@Test
-	public void testCleanFilter() throws IOException,
-			GitAPIException {
+	public void testCleanFilter() throws IOException, GitAPIException {
 		writeTrashFile(".gitattributes", "*.txt filter=tstFilter");
 		writeTrashFile("src/a.tmp", "foo");
 		// Caution: we need a trailing '\n' since sed on mac always appends
@@ -134,6 +157,128 @@ public void testCleanFilter() throws IOException,
 		}
 	}
 
+	@Theory
+	public void testBuiltinFilters(boolean sleepBeforeAdd)
+			throws IOException,
+			GitAPIException, InterruptedException {
+		writeTrashFile(".gitattributes", "*.txt filter=lfs");
+		writeTrashFile("src/a.tmp", "foo");
+		// Caution: we need a trailing '\n' since sed on mac always appends
+		// linefeeds if missing
+		File script = writeTempFile("sed s/o/e/g");
+		File f = writeTrashFile("src/a.txt", "foo\n");
+
+		try (Git git = new Git(db)) {
+			if (!sleepBeforeAdd) {
+				fsTick(f);
+			}
+			git.add().addFilepattern(".gitattributes").call();
+			StoredConfig config = git.getRepository().getConfig();
+			config.setString("filter", "lfs", "clean",
+					"sh " + slashify(script.getPath()));
+			config.setString("filter", "lfs", "smudge",
+					"sh " + slashify(script.getPath()));
+			config.setBoolean("filter", "lfs", "useJGitBuiltin", true);
+			config.save();
+
+			if (!sleepBeforeAdd) {
+				fsTick(f);
+			}
+			git.add().addFilepattern("src/a.txt").addFilepattern("src/a.tmp")
+					.addFilepattern(".gitattributes").call();
+
+			assertEquals(
+					"[.gitattributes, mode:100644, content:*.txt filter=lfs][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:version https://git-lfs.github.com/spec/v1\noid sha256:b5bb9d8014a0f9b1d61e21e796d78dccdf1352f23cd32812f4850b878ae4944c\nsize 4\n]",
+					indexState(CONTENT));
+
+			RevCommit c1 = git.commit().setMessage("c1").call();
+			assertTrue(git.status().call().isClean());
+			f = writeTrashFile("src/a.txt", "foobar\n");
+			if (!sleepBeforeAdd) {
+				fsTick(f);
+			}
+			git.add().addFilepattern("src/a.txt").call();
+			git.commit().setMessage("c2").call();
+			assertTrue(git.status().call().isClean());
+			assertEquals(
+					"[.gitattributes, mode:100644, content:*.txt filter=lfs][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:version https://git-lfs.github.com/spec/v1\noid sha256:aec070645fe53ee3b3763059376134f058cc337247c978add178b6ccdfb0019f\nsize 7\n]",
+					indexState(CONTENT));
+			assertEquals("foobar\n", read("src/a.txt"));
+			git.checkout().setName(c1.getName()).call();
+			assertEquals(
+					"[.gitattributes, mode:100644, content:*.txt filter=lfs][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:version https://git-lfs.github.com/spec/v1\noid sha256:b5bb9d8014a0f9b1d61e21e796d78dccdf1352f23cd32812f4850b878ae4944c\nsize 4\n]",
+					indexState(CONTENT));
+			assertEquals(
+					"foo\n", read("src/a.txt"));
+		}
+	}
+
+	@Theory
+	public void testBuiltinCleanFilter(boolean sleepBeforeAdd)
+			throws IOException, GitAPIException, InterruptedException {
+		writeTrashFile(".gitattributes", "*.txt filter=lfs");
+		writeTrashFile("src/a.tmp", "foo");
+		// Caution: we need a trailing '\n' since sed on mac always appends
+		// linefeeds if missing
+		File script = writeTempFile("sed s/o/e/g");
+		File f = writeTrashFile("src/a.txt", "foo\n");
+
+		// unregister the smudge filter. Only clean filter should be builtin
+		FilterCommandRegistry.unregister(
+				org.eclipse.jgit.lib.Constants.BUILTIN_FILTER_PREFIX
+						+ "lfs/smudge");
+
+		try (Git git = new Git(db)) {
+			if (!sleepBeforeAdd) {
+				fsTick(f);
+			}
+			git.add().addFilepattern(".gitattributes").call();
+			StoredConfig config = git.getRepository().getConfig();
+			config.setString("filter", "lfs", "clean",
+					"sh " + slashify(script.getPath()));
+			config.setString("filter", "lfs", "smudge",
+					"sh " + slashify(script.getPath()));
+			config.setBoolean("filter", "lfs", "useJGitBuiltin", true);
+			config.save();
+
+			if (!sleepBeforeAdd) {
+				fsTick(f);
+			}
+			git.add().addFilepattern("src/a.txt").addFilepattern("src/a.tmp")
+					.addFilepattern(".gitattributes").call();
+
+			assertEquals(
+					"[.gitattributes, mode:100644, content:*.txt filter=lfs][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:version https://git-lfs.github.com/spec/v1\noid sha256:b5bb9d8014a0f9b1d61e21e796d78dccdf1352f23cd32812f4850b878ae4944c\nsize 4\n]",
+					indexState(CONTENT));
+
+			RevCommit c1 = git.commit().setMessage("c1").call();
+			assertTrue(git.status().call().isClean());
+			f = writeTrashFile("src/a.txt", "foobar\n");
+			if (!sleepBeforeAdd) {
+				fsTick(f);
+			}
+			git.add().addFilepattern("src/a.txt").call();
+			git.commit().setMessage("c2").call();
+			assertTrue(git.status().call().isClean());
+			assertEquals(
+					"[.gitattributes, mode:100644, content:*.txt filter=lfs][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:version https://git-lfs.github.com/spec/v1\noid sha256:aec070645fe53ee3b3763059376134f058cc337247c978add178b6ccdfb0019f\nsize 7\n]",
+					indexState(CONTENT));
+			assertEquals("foobar\n", read("src/a.txt"));
+			git.checkout().setName(c1.getName()).call();
+			assertEquals(
+					"[.gitattributes, mode:100644, content:*.txt filter=lfs][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:version https://git-lfs.github.com/spec/v1\noid sha256:b5bb9d8014a0f9b1d61e21e796d78dccdf1352f23cd32812f4850b878ae4944c\nsize 4\n]",
+					indexState(CONTENT));
+			// due to lfs clean filter but dummy smudge filter we expect strange
+			// content. The smudge filter converts from real content to pointer
+			// file content (starting with "version ") but the smudge filter
+			// replaces 'o' by 'e' which results in a text starting with
+			// "versien "
+			assertEquals(
+					"versien https://git-lfs.github.cem/spec/v1\neid sha256:b5bb9d8014a0f9b1d61e21e796d78dccdf1352f23cd32812f4850b878ae4944c\nsize 4\n",
+					read("src/a.txt"));
+		}
+	}
+
 	@Test
 	public void testAttributesWithTreeWalkFilter()
 			throws IOException, GitAPIException {

diff --git a/org.eclipse.jgit.test/tst/org/eclipse/jgit/api/CheckoutCommandTest.java b/org.eclipse.jgit.test/tst/org/eclipse/jgit/api/CheckoutCommandTest.java
index 0bb6610..3c19672 100644
--- a/org.eclipse.jgit.test/tst/org/eclipse/jgit/api/CheckoutCommandTest.java
+++ b/org.eclipse.jgit.test/tst/org/eclipse/jgit/api/CheckoutCommandTest.java

@@ -74,6 +74,8 @@
 import org.eclipse.jgit.dircache.DirCacheEntry;
 import org.eclipse.jgit.junit.JGitTestUtil;
 import org.eclipse.jgit.junit.RepositoryTestCase;
+import org.eclipse.jgit.lfs.CleanFilter;
+import org.eclipse.jgit.lfs.SmudgeFilter;
 import org.eclipse.jgit.lib.ConfigConstants;
 import org.eclipse.jgit.lib.Constants;
 import org.eclipse.jgit.lib.Ref;
@@ -87,6 +89,7 @@
 import org.eclipse.jgit.transport.RemoteConfig;
 import org.eclipse.jgit.transport.URIish;
 import org.eclipse.jgit.util.FileUtils;
+import org.eclipse.jgit.util.SystemReader;
 import org.junit.Before;
 import org.junit.Test;
 
@@ -100,6 +103,8 @@ public class CheckoutCommandTest extends RepositoryTestCase {
 	@Override
 	@Before
 	public void setUp() throws Exception {
+		CleanFilter.register();
+		SmudgeFilter.register();
 		super.setUp();
 		git = new Git(db);
 		// commit something
@@ -563,11 +568,11 @@ public void testCheckoutAutoCrlfTrue() throws Exception {
 	public void testSmudgeFilter_modifyExisting() throws IOException, GitAPIException {
 		File script = writeTempFile("sed s/o/e/g");
 		StoredConfig config = git.getRepository().getConfig();
-		config.setString("filter", "tstFilter", "smudge",
+		config.setString("filter", "lfs", "smudge",
 				"sh " + slashify(script.getPath()));
 		config.save();
 
-		writeTrashFile(".gitattributes", "*.txt filter=tstFilter");
+		writeTrashFile(".gitattributes", "*.txt filter=lfs");
 		git.add().addFilepattern(".gitattributes").call();
 		git.commit().setMessage("add filter").call();
 
@@ -589,7 +594,7 @@ public void testSmudgeFilter_modifyExisting() throws IOException, GitAPIExceptio
 		git.checkout().setName(content2.getName()).call();
 
 		assertEquals(
-				"[.gitattributes, mode:100644, content:*.txt filter=tstFilter][Test.txt, mode:100644, content:Some change][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:foo\n]",
+				"[.gitattributes, mode:100644, content:*.txt filter=lfs][Test.txt, mode:100644, content:Some change][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:foo\n]",
 				indexState(CONTENT));
 		assertEquals(Sets.of("src/a.txt"), git.status().call().getModified());
 		assertEquals("foo", read("src/a.tmp"));
@@ -601,7 +606,7 @@ public void testSmudgeFilter_createNew()
 			throws IOException, GitAPIException {
 		File script = writeTempFile("sed s/o/e/g");
 		StoredConfig config = git.getRepository().getConfig();
-		config.setString("filter", "tstFilter", "smudge",
+		config.setString("filter", "lfs", "smudge",
 				"sh " + slashify(script.getPath()));
 		config.save();
 
@@ -609,7 +614,7 @@ public void testSmudgeFilter_createNew()
 		git.add().addFilepattern("foo").call();
 		RevCommit initial = git.commit().setMessage("initial").call();
 
-		writeTrashFile(".gitattributes", "*.txt filter=tstFilter");
+		writeTrashFile(".gitattributes", "*.txt filter=lfs");
 		git.add().addFilepattern(".gitattributes").call();
 		git.commit().setMessage("add filter").call();
 
@@ -625,7 +630,7 @@ public void testSmudgeFilter_createNew()
 		git.checkout().setName(content.getName()).call();
 
 		assertEquals(
-				"[.gitattributes, mode:100644, content:*.txt filter=tstFilter][Test.txt, mode:100644, content:Some change][foo, mode:100644, content:foo][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:foo\n]",
+				"[.gitattributes, mode:100644, content:*.txt filter=lfs][Test.txt, mode:100644, content:Some change][foo, mode:100644, content:foo][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:foo\n]",
 				indexState(CONTENT));
 		assertEquals("foo", read("src/a.tmp"));
 		assertEquals("fee\n", read("src/a.txt"));
@@ -636,7 +641,7 @@ public void testSmudgeFilter_deleteFileAndRestoreFromCommit()
 			throws IOException, GitAPIException {
 		File script = writeTempFile("sed s/o/e/g");
 		StoredConfig config = git.getRepository().getConfig();
-		config.setString("filter", "tstFilter", "smudge",
+		config.setString("filter", "lfs", "smudge",
 				"sh " + slashify(script.getPath()));
 		config.save();
 
@@ -644,7 +649,7 @@ public void testSmudgeFilter_deleteFileAndRestoreFromCommit()
 		git.add().addFilepattern("foo").call();
 		git.commit().setMessage("initial").call();
 
-		writeTrashFile(".gitattributes", "*.txt filter=tstFilter");
+		writeTrashFile(".gitattributes", "*.txt filter=lfs");
 		git.add().addFilepattern(".gitattributes").call();
 		git.commit().setMessage("add filter").call();
 
@@ -661,7 +666,7 @@ public void testSmudgeFilter_deleteFileAndRestoreFromCommit()
 				.call();
 
 		assertEquals(
-				"[.gitattributes, mode:100644, content:*.txt filter=tstFilter][Test.txt, mode:100644, content:Some change][foo, mode:100644, content:foo][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:foo\n]",
+				"[.gitattributes, mode:100644, content:*.txt filter=lfs][Test.txt, mode:100644, content:Some change][foo, mode:100644, content:foo][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:foo\n]",
 				indexState(CONTENT));
 		assertEquals("foo", read("src/a.tmp"));
 		assertEquals("fee\n", read("src/a.txt"));
@@ -672,7 +677,7 @@ public void testSmudgeFilter_deleteFileAndRestoreFromIndex()
 			throws IOException, GitAPIException {
 		File script = writeTempFile("sed s/o/e/g");
 		StoredConfig config = git.getRepository().getConfig();
-		config.setString("filter", "tstFilter", "smudge",
+		config.setString("filter", "lfs", "smudge",
 				"sh " + slashify(script.getPath()));
 		config.save();
 
@@ -680,7 +685,7 @@ public void testSmudgeFilter_deleteFileAndRestoreFromIndex()
 		git.add().addFilepattern("foo").call();
 		git.commit().setMessage("initial").call();
 
-		writeTrashFile(".gitattributes", "*.txt filter=tstFilter");
+		writeTrashFile(".gitattributes", "*.txt filter=lfs");
 		git.add().addFilepattern(".gitattributes").call();
 		git.commit().setMessage("add filter").call();
 
@@ -696,7 +701,7 @@ public void testSmudgeFilter_deleteFileAndRestoreFromIndex()
 		git.checkout().addPath("src/a.txt").call();
 
 		assertEquals(
-				"[.gitattributes, mode:100644, content:*.txt filter=tstFilter][Test.txt, mode:100644, content:Some change][foo, mode:100644, content:foo][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:foo\n]",
+				"[.gitattributes, mode:100644, content:*.txt filter=lfs][Test.txt, mode:100644, content:Some change][foo, mode:100644, content:foo][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:foo\n]",
 				indexState(CONTENT));
 		assertEquals("foo", read("src/a.tmp"));
 		assertEquals("fee\n", read("src/a.txt"));
@@ -707,7 +712,7 @@ public void testSmudgeFilter_deleteFileAndCreateBranchAndRestoreFromCommit()
 			throws IOException, GitAPIException {
 		File script = writeTempFile("sed s/o/e/g");
 		StoredConfig config = git.getRepository().getConfig();
-		config.setString("filter", "tstFilter", "smudge",
+		config.setString("filter", "lfs", "smudge",
 				"sh " + slashify(script.getPath()));
 		config.save();
 
@@ -715,7 +720,7 @@ public void testSmudgeFilter_deleteFileAndCreateBranchAndRestoreFromCommit()
 		git.add().addFilepattern("foo").call();
 		git.commit().setMessage("initial").call();
 
-		writeTrashFile(".gitattributes", "*.txt filter=tstFilter");
+		writeTrashFile(".gitattributes", "*.txt filter=lfs");
 		git.add().addFilepattern(".gitattributes").call();
 		git.commit().setMessage("add filter").call();
 
@@ -732,7 +737,7 @@ public void testSmudgeFilter_deleteFileAndCreateBranchAndRestoreFromCommit()
 				.setStartPoint(content).addPath("src/a.txt").call();
 
 		assertEquals(
-				"[.gitattributes, mode:100644, content:*.txt filter=tstFilter][Test.txt, mode:100644, content:Some change][foo, mode:100644, content:foo][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:foo\n]",
+				"[.gitattributes, mode:100644, content:*.txt filter=lfs][Test.txt, mode:100644, content:Some change][foo, mode:100644, content:foo][src/a.tmp, mode:100644, content:foo][src/a.txt, mode:100644, content:foo\n]",
 				indexState(CONTENT));
 		assertEquals("foo", read("src/a.tmp"));
 		assertEquals("fee\n", read("src/a.txt"));
@@ -745,12 +750,13 @@ public void testSmudgeAndClean() throws Exception {
 
 		try (Git git2 = new Git(db)) {
 			StoredConfig config = git.getRepository().getConfig();
-			config.setString("filter", "tstFilter", "smudge",
+			config.setString("filter", "lfs", "smudge",
 					"sh " + slashify(smudge_filter.getPath()));
-			config.setString("filter", "tstFilter", "clean",
+			config.setString("filter", "lfs", "clean",
 					"sh " + slashify(clean_filter.getPath()));
+			config.setBoolean("filter", "lfs", "useJGitBuiltin", true);
 			config.save();
-			writeTrashFile(".gitattributes", "filterTest.txt filter=tstFilter");
+			writeTrashFile(".gitattributes", "filterTest.txt filter=lfs");
 			git2.add().addFilepattern(".gitattributes").call();
 			git2.commit().setMessage("add attributes").call();
 
@@ -758,7 +764,7 @@ public void testSmudgeAndClean() throws Exception {
 			git2.add().addFilepattern("filterTest.txt").call();
 			RevCommit one = git2.commit().setMessage("add filterText.txt").call();
 			assertEquals(
-					"[.gitattributes, mode:100644, content:filterTest.txt filter=tstFilter][Test.txt, mode:100644, content:Some change][filterTest.txt, mode:100644, content:hello world, @version\n]",
+					"[.gitattributes, mode:100644, content:filterTest.txt filter=lfs][Test.txt, mode:100644, content:Some change][filterTest.txt, mode:100644, content:version https://git-lfs.github.com/spec/v1\noid sha256:7bd5d32e5c494354aa4c2473a1306d0ce7b52cc3bffeb342c03cd517ef8cf8da\nsize 16\n]",
 					indexState(CONTENT));
 
 			fsTick(writeTrashFile("filterTest.txt", "bon giorno world, V1\n"));
@@ -767,25 +773,57 @@ public void testSmudgeAndClean() throws Exception {
 
 			assertTrue(git2.status().call().isClean());
 			assertEquals(
-					"[.gitattributes, mode:100644, content:filterTest.txt filter=tstFilter][Test.txt, mode:100644, content:Some change][filterTest.txt, mode:100644, content:bon giorno world, @version\n]",
+					"[.gitattributes, mode:100644, content:filterTest.txt filter=lfs][Test.txt, mode:100644, content:Some change][filterTest.txt, mode:100644, content:version https://git-lfs.github.com/spec/v1\noid sha256:087148cccf53b0049c56475c1595113c9da4b638997c3489af8ac7108d51ef13\nsize 21\n]",
 					indexState(CONTENT));
 
 			git2.checkout().setName(one.getName()).call();
 			assertTrue(git2.status().call().isClean());
 			assertEquals(
-					"[.gitattributes, mode:100644, content:filterTest.txt filter=tstFilter][Test.txt, mode:100644, content:Some change][filterTest.txt, mode:100644, content:hello world, @version\n]",
+					"[.gitattributes, mode:100644, content:filterTest.txt filter=lfs][Test.txt, mode:100644, content:Some change][filterTest.txt, mode:100644, content:version https://git-lfs.github.com/spec/v1\noid sha256:7bd5d32e5c494354aa4c2473a1306d0ce7b52cc3bffeb342c03cd517ef8cf8da\nsize 16\n]",
 					indexState(CONTENT));
 			assertEquals("hello world, V1\n", read("filterTest.txt"));
 
 			git2.checkout().setName(two.getName()).call();
 			assertTrue(git2.status().call().isClean());
 			assertEquals(
-					"[.gitattributes, mode:100644, content:filterTest.txt filter=tstFilter][Test.txt, mode:100644, content:Some change][filterTest.txt, mode:100644, content:bon giorno world, @version\n]",
+					"[.gitattributes, mode:100644, content:filterTest.txt filter=lfs][Test.txt, mode:100644, content:Some change][filterTest.txt, mode:100644, content:version https://git-lfs.github.com/spec/v1\noid sha256:087148cccf53b0049c56475c1595113c9da4b638997c3489af8ac7108d51ef13\nsize 21\n]",
 					indexState(CONTENT));
 			assertEquals("bon giorno world, V1\n", read("filterTest.txt"));
 		}
 	}
 
+	@Test
+	public void testNonDeletableFilesOnWindows()
+			throws GitAPIException, IOException {
+		// Only on windows a FileInputStream blocks us from deleting a file
+		org.junit.Assume.assumeTrue(SystemReader.getInstance().isWindows());
+		writeTrashFile("toBeModified.txt", "a");
+		writeTrashFile("toBeDeleted.txt", "a");
+		git.add().addFilepattern(".").call();
+		RevCommit addFiles = git.commit().setMessage("add more files").call();
+
+		git.rm().setCached(false).addFilepattern("Test.txt")
+				.addFilepattern("toBeDeleted.txt").call();
+		writeTrashFile("toBeModified.txt", "b");
+		writeTrashFile("toBeCreated.txt", "a");
+		git.add().addFilepattern(".").call();
+		RevCommit crudCommit = git.commit().setMessage("delete, modify, add")
+				.call();
+		git.checkout().setName(addFiles.getName()).call();
+		try ( FileInputStream fis=new FileInputStream(new File(db.getWorkTree(), "Test.txt")) ) {
+			CheckoutCommand coCommand = git.checkout();
+			coCommand.setName(crudCommit.getName()).call();
+			CheckoutResult result = coCommand.getResult();
+			assertEquals(Status.NONDELETED, result.getStatus());
+			assertEquals("[Test.txt, toBeDeleted.txt]",
+					result.getRemovedList().toString());
+			assertEquals("[toBeCreated.txt, toBeModified.txt]",
+					result.getModifiedList().toString());
+			assertEquals("[Test.txt]", result.getUndeletedList().toString());
+			assertTrue(result.getConflictList().isEmpty());
+		}
+	}
+
 	private File writeTempFile(String body) throws IOException {
 		File f = File.createTempFile("AddCommandTest_", "");
 		JGitTestUtil.write(f, body);

diff --git a/org.eclipse.jgit.test/tst/org/eclipse/jgit/indexdiff/IndexDiffWithSymlinkTest.java b/org.eclipse.jgit.test/tst/org/eclipse/jgit/indexdiff/IndexDiffWithSymlinkTest.java
new file mode 100644
index 0000000..4f3b601
--- /dev/null
+++ b/org.eclipse.jgit.test/tst/org/eclipse/jgit/indexdiff/IndexDiffWithSymlinkTest.java

@@ -0,0 +1,234 @@
+/*
+ * Copyright (C) 2015 Thomas Wolf <thomas.wolf@paranor.ch>
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.indexdiff;
+
+import static org.junit.Assert.assertArrayEquals;
+import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertNotNull;
+import static org.junit.Assert.assertTrue;
+import static org.junit.Assert.fail;
+import static org.junit.Assume.assumeTrue;
+
+import java.io.BufferedOutputStream;
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.FileOutputStream;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.InputStreamReader;
+import java.io.OutputStream;
+import java.io.OutputStreamWriter;
+import java.io.Writer;
+import java.lang.reflect.InvocationTargetException;
+import java.lang.reflect.Method;
+import java.nio.charset.StandardCharsets;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.nio.file.Paths;
+import java.util.Collections;
+
+import org.eclipse.jgit.junit.LocalDiskRepositoryTestCase;
+import org.eclipse.jgit.lib.Constants;
+import org.eclipse.jgit.lib.IndexDiff;
+import org.eclipse.jgit.lib.Repository;
+import org.eclipse.jgit.storage.file.FileRepositoryBuilder;
+import org.eclipse.jgit.treewalk.FileTreeIterator;
+import org.eclipse.jgit.treewalk.WorkingTreeIterator;
+import org.eclipse.jgit.treewalk.filter.PathFilterGroup;
+import org.eclipse.jgit.util.FS;
+import org.eclipse.jgit.util.SystemReader;
+import org.junit.Before;
+import org.junit.Test;
+
+/**
+ * MacOS-only test for dealing with symlinks in IndexDiff. Recreates using cgit
+ * a test repository prepared with git 2.2.1 on MacOS 10.7.5 containing some
+ * symlinks. Examines a symlink pointing to a file named "äéü.txt" (should be
+ * encoded as UTF-8 NFC), changes it through Java, examines it again to verify
+ * it's been changed to UTF-8 NFD, and finally calculates an IndexDiff.
+ */
+public class IndexDiffWithSymlinkTest extends LocalDiskRepositoryTestCase {
+
+	private static final String FILEREPO = "filerepo";
+
+	private static final String TESTFOLDER = "testfolder";
+
+	private static final String TESTTARGET = "äéü.txt";
+
+	private static final String TESTLINK = "aeu.txt";
+
+	private static final byte[] NFC = // "äéü.txt" in NFC
+	{ -61, -92, -61, -87, -61, -68, 46, 116, 120, 116 };
+
+	private static final byte[] NFD = // "äéü.txt" in NFD
+	{ 97, -52, -120, 101, -52, -127, 117, -52, -120, 46, 116, 120, 116 };
+
+	private File testRepoDir;
+
+	@Override
+	@Before
+	public void setUp() throws Exception {
+		assumeTrue(SystemReader.getInstance().isMacOS()
+				&& FS.DETECTED.supportsSymlinks());
+		super.setUp();
+		File testDir = createTempDirectory(this.getClass().getSimpleName());
+		InputStream in = this.getClass().getClassLoader().getResourceAsStream(
+				this.getClass().getPackage().getName().replace('.', '/') + '/'
+						+ FILEREPO + ".txt");
+		assertNotNull("Test repo file not found", in);
+		try {
+			testRepoDir = restoreGitRepo(in, testDir, FILEREPO);
+		} finally {
+			in.close();
+		}
+	}
+
+	private File restoreGitRepo(InputStream in, File testDir, String name)
+			throws Exception {
+		File exportedTestRepo = new File(testDir, name + ".txt");
+		copy(in, exportedTestRepo);
+		// Use CGit to restore
+		File restoreScript = new File(testDir, name + ".sh");
+		try (OutputStream out = new BufferedOutputStream(
+				new FileOutputStream(restoreScript));
+				Writer writer = new OutputStreamWriter(out,
+						StandardCharsets.UTF_8)) {
+			writer.write("echo `which git` 1>&2\n");
+			writer.write("echo `git --version` 1>&2\n");
+			writer.write("git init " + name + " && \\\n");
+			writer.write("cd ./" + name + " && \\\n");
+			writer.write("git fast-import < ../" + name + ".txt && \\\n");
+			writer.write("git checkout -f\n");
+		}
+		String[] cmd = { "/bin/sh", "./" + name + ".sh" };
+		int exitCode;
+		String stdErr;
+		Process process = Runtime.getRuntime().exec(cmd, null, testDir);
+		try (InputStream stdOutStream = process.getInputStream();
+				InputStream stdErrStream = process.getErrorStream();
+				OutputStream stdInStream = process.getOutputStream()) {
+			readStream(stdOutStream);
+			stdErr = readStream(stdErrStream);
+			process.waitFor();
+			exitCode = process.exitValue();
+		}
+		if (exitCode != 0) {
+			fail("cgit repo restore returned " + exitCode + '\n' + stdErr);
+		}
+		return new File(new File(testDir, name), Constants.DOT_GIT);
+	}
+
+	private void copy(InputStream from, File to) throws IOException {
+		try (OutputStream out = new FileOutputStream(to)) {
+			byte[] buffer = new byte[4096];
+			int n;
+			while ((n = from.read(buffer)) > 0) {
+				out.write(buffer, 0, n);
+			}
+		}
+	}
+
+	private String readStream(InputStream stream) throws IOException {
+		try (BufferedReader in = new BufferedReader(
+				new InputStreamReader(stream))) {
+			StringBuilder out = new StringBuilder();
+			String line;
+			while ((line = in.readLine()) != null) {
+				out.append(line).append('\n');
+			}
+			return out.toString();
+		}
+	}
+
+	@Test
+	public void testSymlinkWithEncodingDifference() throws Exception {
+		try (Repository testRepo = FileRepositoryBuilder.create(testRepoDir)) {
+			File workingTree = testRepo.getWorkTree();
+			File symLink = new File(new File(workingTree, TESTFOLDER),
+					TESTLINK);
+			// Read the symlink as it was created by cgit
+			Path linkTarget = Files.readSymbolicLink(symLink.toPath());
+			assertEquals("Unexpected link target", TESTTARGET,
+					linkTarget.toString());
+			byte[] raw = rawPath(linkTarget);
+			if (raw != null) {
+				assertArrayEquals("Expected an NFC link target", NFC, raw);
+			}
+			// Now re-create that symlink through Java
+			assertTrue("Could not delete symlink", symLink.delete());
+			Files.createSymbolicLink(symLink.toPath(), Paths.get(TESTTARGET));
+			// Read it again
+			linkTarget = Files.readSymbolicLink(symLink.toPath());
+			assertEquals("Unexpected link target", TESTTARGET,
+					linkTarget.toString());
+			raw = rawPath(linkTarget);
+			if (raw != null) {
+				assertArrayEquals("Expected an NFD link target", NFD, raw);
+			}
+			// Do the indexdiff
+			WorkingTreeIterator iterator = new FileTreeIterator(testRepo);
+			IndexDiff diff = new IndexDiff(testRepo, Constants.HEAD, iterator);
+			diff.setFilter(PathFilterGroup.createFromStrings(
+					Collections.singleton(TESTFOLDER + '/' + TESTLINK)));
+			diff.diff();
+			// We're testing that this does NOT throw "EOFException: Short read
+			// of block." The diff will not report any modified files -- the
+			// link modification is not visible to JGit, which always works with
+			// the Java internal NFC encoding. CGit does report the link as an
+			// unstaged modification here, though.
+		}
+	}
+
+	private byte[] rawPath(Path p) {
+		try {
+			Method method = p.getClass().getDeclaredMethod("asByteArray");
+			if (method != null) {
+				method.setAccessible(true);
+				return (byte[]) method.invoke(p);
+			}
+		} catch (NoSuchMethodException | IllegalAccessException
+				| IllegalArgumentException | InvocationTargetException e) {
+			// Ignore and fall through.
+		}
+		return null;
+	}
+}

diff --git a/org.eclipse.jgit.test/tst/org/eclipse/jgit/util/FilterCommandsTest.java b/org.eclipse.jgit.test/tst/org/eclipse/jgit/util/FilterCommandsTest.java
new file mode 100644
index 0000000..0d31811
--- /dev/null
+++ b/org.eclipse.jgit.test/tst/org/eclipse/jgit/util/FilterCommandsTest.java

@@ -0,0 +1,251 @@
+/*
+ * Copyright (C) 2016, Christian Halstrick <christian.halstrick@sap.com>
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.util;
+
+import static org.junit.Assert.assertEquals;
+
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.OutputStream;
+
+import org.eclipse.jgit.api.Git;
+import org.eclipse.jgit.api.errors.GitAPIException;
+import org.eclipse.jgit.attributes.FilterCommand;
+import org.eclipse.jgit.attributes.FilterCommandFactory;
+import org.eclipse.jgit.attributes.FilterCommandRegistry;
+import org.eclipse.jgit.junit.RepositoryTestCase;
+import org.eclipse.jgit.lib.Constants;
+import org.eclipse.jgit.lib.RefUpdate;
+import org.eclipse.jgit.lib.Repository;
+import org.eclipse.jgit.lib.StoredConfig;
+import org.eclipse.jgit.revwalk.RevCommit;
+import org.junit.Before;
+import org.junit.Test;
+
+public class FilterCommandsTest extends RepositoryTestCase {
+	private Git git;
+
+	RevCommit initialCommit;
+
+	RevCommit secondCommit;
+
+	class TestCommandFactory implements FilterCommandFactory {
+		private int prefix;
+
+		public TestCommandFactory(int prefix) {
+			this.prefix = prefix;
+		}
+
+		@Override
+		public FilterCommand create(Repository repo, InputStream in,
+				final OutputStream out) {
+			FilterCommand cmd = new FilterCommand(in, out) {
+
+				@Override
+				public int run() throws IOException {
+					int b = in.read();
+					if (b == -1) {
+						return b;
+					}
+					out.write(prefix);
+					out.write(b);
+					return 1;
+				}
+			};
+			return cmd;
+		}
+	}
+
+	@Override
+	@Before
+	public void setUp() throws Exception {
+		super.setUp();
+		git = new Git(db);
+		// commit something
+		writeTrashFile("Test.txt", "Hello world");
+		git.add().addFilepattern("Test.txt").call();
+		initialCommit = git.commit().setMessage("Initial commit").call();
+
+		// create a master branch and switch to it
+		git.branchCreate().setName("test").call();
+		RefUpdate rup = db.updateRef(Constants.HEAD);
+		rup.link("refs/heads/test");
+
+		// commit something on the test branch
+		writeTrashFile("Test.txt", "Some change");
+		git.add().addFilepattern("Test.txt").call();
+		secondCommit = git.commit().setMessage("Second commit").call();
+	}
+
+	@Test
+	public void testBuiltinCleanFilter()
+			throws IOException, GitAPIException {
+		String builtinCommandName = "jgit://builtin/test/clean";
+		FilterCommandRegistry.register(builtinCommandName,
+				new TestCommandFactory('c'));
+		StoredConfig config = git.getRepository().getConfig();
+		config.setString("filter", "test", "clean", builtinCommandName);
+		config.save();
+
+		writeTrashFile(".gitattributes", "*.txt filter=test");
+		git.add().addFilepattern(".gitattributes").call();
+		git.commit().setMessage("add filter").call();
+
+		writeTrashFile("Test.txt", "Hello again");
+		git.add().addFilepattern("Test.txt").call();
+		assertEquals(
+				"[.gitattributes, mode:100644, content:*.txt filter=test][Test.txt, mode:100644, content:cHceclclcoc cacgcacicn]",
+				indexState(CONTENT));
+
+		writeTrashFile("Test.bin", "Hello again");
+		git.add().addFilepattern("Test.bin").call();
+		assertEquals(
+				"[.gitattributes, mode:100644, content:*.txt filter=test][Test.bin, mode:100644, content:Hello again][Test.txt, mode:100644, content:cHceclclcoc cacgcacicn]",
+				indexState(CONTENT));
+
+		config.setString("filter", "test", "clean", null);
+		config.save();
+
+		git.add().addFilepattern("Test.txt").call();
+		assertEquals(
+				"[.gitattributes, mode:100644, content:*.txt filter=test][Test.bin, mode:100644, content:Hello again][Test.txt, mode:100644, content:Hello again]",
+				indexState(CONTENT));
+
+		config.setString("filter", "test", "clean", null);
+		config.save();
+	}
+
+	@Test
+	public void testBuiltinSmudgeFilter() throws IOException, GitAPIException {
+		String builtinCommandName = "jgit://builtin/test/smudge";
+		FilterCommandRegistry.register(builtinCommandName,
+				new TestCommandFactory('s'));
+		StoredConfig config = git.getRepository().getConfig();
+		config.setString("filter", "test", "smudge", builtinCommandName);
+		config.save();
+
+		writeTrashFile(".gitattributes", "*.txt filter=test");
+		git.add().addFilepattern(".gitattributes").call();
+		git.commit().setMessage("add filter").call();
+
+		writeTrashFile("Test.txt", "Hello again");
+		git.add().addFilepattern("Test.txt").call();
+		assertEquals(
+				"[.gitattributes, mode:100644, content:*.txt filter=test][Test.txt, mode:100644, content:Hello again]",
+				indexState(CONTENT));
+		assertEquals("Hello again", read("Test.txt"));
+		deleteTrashFile("Test.txt");
+		git.checkout().addPath("Test.txt").call();
+		assertEquals("sHseslslsos sasgsasisn", read("Test.txt"));
+
+		writeTrashFile("Test.bin", "Hello again");
+		git.add().addFilepattern("Test.bin").call();
+		assertEquals(
+				"[.gitattributes, mode:100644, content:*.txt filter=test][Test.bin, mode:100644, content:Hello again][Test.txt, mode:100644, content:Hello again]",
+				indexState(CONTENT));
+		deleteTrashFile("Test.bin");
+		git.checkout().addPath("Test.bin").call();
+		assertEquals("Hello again", read("Test.bin"));
+
+		config.setString("filter", "test", "clean", null);
+		config.save();
+
+		git.add().addFilepattern("Test.txt").call();
+		assertEquals(
+				"[.gitattributes, mode:100644, content:*.txt filter=test][Test.bin, mode:100644, content:Hello again][Test.txt, mode:100644, content:sHseslslsos sasgsasisn]",
+				indexState(CONTENT));
+
+		config.setString("filter", "test", "clean", null);
+		config.save();
+	}
+
+	@Test
+	public void testBuiltinCleanAndSmudgeFilter() throws IOException, GitAPIException {
+		String builtinCommandPrefix = "jgit://builtin/test/";
+		FilterCommandRegistry.register(builtinCommandPrefix + "smudge",
+				new TestCommandFactory('s'));
+		FilterCommandRegistry.register(builtinCommandPrefix + "clean",
+				new TestCommandFactory('c'));
+		StoredConfig config = git.getRepository().getConfig();
+		config.setString("filter", "test", "smudge", builtinCommandPrefix+"smudge");
+		config.setString("filter", "test", "clean",
+				builtinCommandPrefix + "clean");
+		config.save();
+
+		writeTrashFile(".gitattributes", "*.txt filter=test");
+		git.add().addFilepattern(".gitattributes").call();
+		git.commit().setMessage("add filter").call();
+
+		writeTrashFile("Test.txt", "Hello again");
+		git.add().addFilepattern("Test.txt").call();
+		assertEquals(
+				"[.gitattributes, mode:100644, content:*.txt filter=test][Test.txt, mode:100644, content:cHceclclcoc cacgcacicn]",
+				indexState(CONTENT));
+		assertEquals("Hello again", read("Test.txt"));
+		deleteTrashFile("Test.txt");
+		git.checkout().addPath("Test.txt").call();
+		assertEquals("scsHscsescslscslscsoscs scsascsgscsascsiscsn",
+				read("Test.txt"));
+
+		writeTrashFile("Test.bin", "Hello again");
+		git.add().addFilepattern("Test.bin").call();
+		assertEquals(
+				"[.gitattributes, mode:100644, content:*.txt filter=test][Test.bin, mode:100644, content:Hello again][Test.txt, mode:100644, content:cHceclclcoc cacgcacicn]",
+				indexState(CONTENT));
+		deleteTrashFile("Test.bin");
+		git.checkout().addPath("Test.bin").call();
+		assertEquals("Hello again", read("Test.bin"));
+
+		config.setString("filter", "test", "clean", null);
+		config.save();
+
+		git.add().addFilepattern("Test.txt").call();
+		assertEquals(
+				"[.gitattributes, mode:100644, content:*.txt filter=test][Test.bin, mode:100644, content:Hello again][Test.txt, mode:100644, content:scsHscsescslscslscsoscs scsascsgscsascsiscsn]",
+				indexState(CONTENT));
+
+		config.setString("filter", "test", "clean", null);
+		config.save();
+	}
+
+}

diff --git a/org.eclipse.jgit.ui/.classpath b/org.eclipse.jgit.ui/.classpath
index a14ade4..110168f 100644
--- a/org.eclipse.jgit.ui/.classpath
+++ b/org.eclipse.jgit.ui/.classpath

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="src" path="resources"/>

diff --git a/org.eclipse.jgit.ui/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit.ui/.settings/org.eclipse.jdt.core.prefs
index 1ce7cd0..808ec3a 100644
--- a/org.eclipse.jgit.ui/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit.ui/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit.ui/META-INF/MANIFEST.MF b/org.eclipse.jgit.ui/META-INF/MANIFEST.MF
index 4492356..b2e0750 100644
--- a/org.eclipse.jgit.ui/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit.ui/META-INF/MANIFEST.MF

@@ -3,14 +3,14 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit.ui
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Vendor: %provider_name
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
-Export-Package: org.eclipse.jgit.awtui;version="4.5.1"
-Import-Package: org.eclipse.jgit.errors;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.lib;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.nls;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.revplot;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.revwalk;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.transport;version="[4.5.1,4.6.0)",
- org.eclipse.jgit.util;version="[4.5.1,4.6.0)"
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
+Export-Package: org.eclipse.jgit.awtui;version="4.6.0"
+Import-Package: org.eclipse.jgit.errors;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.lib;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.nls;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.revplot;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.revwalk;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.transport;version="[4.6.0,4.7.0)",
+ org.eclipse.jgit.util;version="[4.6.0,4.7.0)"

diff --git a/org.eclipse.jgit.ui/pom.xml b/org.eclipse.jgit.ui/pom.xml
index e787181..bf79af0 100644
--- a/org.eclipse.jgit.ui/pom.xml
+++ b/org.eclipse.jgit.ui/pom.xml

@@ -52,7 +52,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit.ui</artifactId>

diff --git a/org.eclipse.jgit/.classpath b/org.eclipse.jgit/.classpath
index 04a2be7..cfcf24a 100644
--- a/org.eclipse.jgit/.classpath
+++ b/org.eclipse.jgit/.classpath

@@ -2,7 +2,7 @@
 <classpath>
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="src" path="resources"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
 	<classpathentry kind="output" path="bin"/>
 </classpath>

diff --git a/org.eclipse.jgit/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.jgit/.settings/org.eclipse.jdt.core.prefs
index bfaf736..4f1759f 100644
--- a/org.eclipse.jgit/.settings/org.eclipse.jdt.core.prefs
+++ b/org.eclipse.jgit/.settings/org.eclipse.jdt.core.prefs

@@ -7,9 +7,9 @@
 org.eclipse.jdt.core.compiler.annotation.nullanalysis=enabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
@@ -112,7 +112,7 @@
 org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
 org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
 org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=error
-org.eclipse.jdt.core.compiler.source=1.7
+org.eclipse.jdt.core.compiler.source=1.8
 org.eclipse.jdt.core.formatter.align_type_members_on_columns=false
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_allocation_expression=16
 org.eclipse.jdt.core.formatter.alignment_for_arguments_in_annotation=0

diff --git a/org.eclipse.jgit/META-INF/MANIFEST.MF b/org.eclipse.jgit/META-INF/MANIFEST.MF
index 5aa9185..673f082 100644
--- a/org.eclipse.jgit/META-INF/MANIFEST.MF
+++ b/org.eclipse.jgit/META-INF/MANIFEST.MF

@@ -2,12 +2,12 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %plugin_name
 Bundle-SymbolicName: org.eclipse.jgit
-Bundle-Version: 4.5.1.qualifier
+Bundle-Version: 4.6.0.qualifier
 Bundle-Localization: plugin
 Bundle-Vendor: %provider_name
 Bundle-ActivationPolicy: lazy
-Export-Package: org.eclipse.jgit.annotations;version="4.5.1",
- org.eclipse.jgit.api;version="4.5.1";
+Export-Package: org.eclipse.jgit.annotations;version="4.6.0",
+ org.eclipse.jgit.api;version="4.6.0";
   uses:="org.eclipse.jgit.revwalk,
    org.eclipse.jgit.treewalk.filter,
    org.eclipse.jgit.diff,
@@ -21,60 +21,60 @@
    org.eclipse.jgit.submodule,
    org.eclipse.jgit.transport,
    org.eclipse.jgit.merge",
- org.eclipse.jgit.api.errors;version="4.5.1";uses:="org.eclipse.jgit.lib,org.eclipse.jgit.errors",
- org.eclipse.jgit.attributes;version="4.5.1",
- org.eclipse.jgit.blame;version="4.5.1";
+ org.eclipse.jgit.api.errors;version="4.6.0";uses:="org.eclipse.jgit.lib,org.eclipse.jgit.errors",
+ org.eclipse.jgit.attributes;version="4.6.0",
+ org.eclipse.jgit.blame;version="4.6.0";
   uses:="org.eclipse.jgit.lib,
    org.eclipse.jgit.revwalk,
    org.eclipse.jgit.treewalk.filter,
    org.eclipse.jgit.diff",
- org.eclipse.jgit.diff;version="4.5.1";
+ org.eclipse.jgit.diff;version="4.6.0";
   uses:="org.eclipse.jgit.patch,
    org.eclipse.jgit.lib,
    org.eclipse.jgit.treewalk,
    org.eclipse.jgit.revwalk,
    org.eclipse.jgit.treewalk.filter,
    org.eclipse.jgit.util",
- org.eclipse.jgit.dircache;version="4.5.1";
+ org.eclipse.jgit.dircache;version="4.6.0";
   uses:="org.eclipse.jgit.lib,
    org.eclipse.jgit.treewalk,
    org.eclipse.jgit.util,
    org.eclipse.jgit.events,
    org.eclipse.jgit.attributes",
- org.eclipse.jgit.errors;version="4.5.1";
+ org.eclipse.jgit.errors;version="4.6.0";
   uses:="org.eclipse.jgit.lib,
    org.eclipse.jgit.internal.storage.pack,
    org.eclipse.jgit.transport,
    org.eclipse.jgit.dircache",
- org.eclipse.jgit.events;version="4.5.1";uses:="org.eclipse.jgit.lib",
- org.eclipse.jgit.fnmatch;version="4.5.1",
- org.eclipse.jgit.gitrepo;version="4.5.1";
+ org.eclipse.jgit.events;version="4.6.0";uses:="org.eclipse.jgit.lib",
+ org.eclipse.jgit.fnmatch;version="4.6.0",
+ org.eclipse.jgit.gitrepo;version="4.6.0";
   uses:="org.eclipse.jgit.api,
    org.eclipse.jgit.lib,
    org.eclipse.jgit.revwalk,
    org.xml.sax.helpers,
    org.xml.sax",
- org.eclipse.jgit.gitrepo.internal;version="4.5.1";x-internal:=true,
- org.eclipse.jgit.hooks;version="4.5.1";uses:="org.eclipse.jgit.lib",
- org.eclipse.jgit.ignore;version="4.5.1",
- org.eclipse.jgit.ignore.internal;version="4.5.1";x-friends:="org.eclipse.jgit.test",
- org.eclipse.jgit.internal;version="4.5.1";x-friends:="org.eclipse.jgit.test,org.eclipse.jgit.http.test",
- org.eclipse.jgit.internal.ketch;version="4.5.1";x-friends:="org.eclipse.jgit.junit,org.eclipse.jgit.test,org.eclipse.jgit.pgm",
- org.eclipse.jgit.internal.storage.dfs;version="4.5.1";
+ org.eclipse.jgit.gitrepo.internal;version="4.6.0";x-internal:=true,
+ org.eclipse.jgit.hooks;version="4.6.0";uses:="org.eclipse.jgit.lib",
+ org.eclipse.jgit.ignore;version="4.6.0",
+ org.eclipse.jgit.ignore.internal;version="4.6.0";x-friends:="org.eclipse.jgit.test",
+ org.eclipse.jgit.internal;version="4.6.0";x-friends:="org.eclipse.jgit.test,org.eclipse.jgit.http.test",
+ org.eclipse.jgit.internal.ketch;version="4.6.0";x-friends:="org.eclipse.jgit.junit,org.eclipse.jgit.test,org.eclipse.jgit.pgm",
+ org.eclipse.jgit.internal.storage.dfs;version="4.6.0";
   x-friends:="org.eclipse.jgit.test,
    org.eclipse.jgit.http.server,
    org.eclipse.jgit.http.test",
- org.eclipse.jgit.internal.storage.file;version="4.5.1";
+ org.eclipse.jgit.internal.storage.file;version="4.6.0";
   x-friends:="org.eclipse.jgit.test,
    org.eclipse.jgit.junit,
    org.eclipse.jgit.junit.http,
    org.eclipse.jgit.http.server,
-   org.eclipse.jgit.lfs.server,
+   org.eclipse.jgit.lfs,
    org.eclipse.jgit.pgm,
    org.eclipse.jgit.pgm.test",
- org.eclipse.jgit.internal.storage.pack;version="4.5.1";x-friends:="org.eclipse.jgit.junit,org.eclipse.jgit.test,org.eclipse.jgit.pgm",
- org.eclipse.jgit.internal.storage.reftree;version="4.5.1";x-friends:="org.eclipse.jgit.junit,org.eclipse.jgit.test,org.eclipse.jgit.pgm",
- org.eclipse.jgit.lib;version="4.5.1";
+ org.eclipse.jgit.internal.storage.pack;version="4.6.0";x-friends:="org.eclipse.jgit.junit,org.eclipse.jgit.test,org.eclipse.jgit.pgm",
+ org.eclipse.jgit.internal.storage.reftree;version="4.6.0";x-friends:="org.eclipse.jgit.junit,org.eclipse.jgit.test,org.eclipse.jgit.pgm",
+ org.eclipse.jgit.lib;version="4.6.0";
   uses:="org.eclipse.jgit.revwalk,
    org.eclipse.jgit.treewalk.filter,
    org.eclipse.jgit.util,
@@ -84,32 +84,32 @@
    org.eclipse.jgit.treewalk,
    org.eclipse.jgit.transport,
    org.eclipse.jgit.submodule",
- org.eclipse.jgit.merge;version="4.5.1";
+ org.eclipse.jgit.merge;version="4.6.0";
   uses:="org.eclipse.jgit.lib,
    org.eclipse.jgit.treewalk,
    org.eclipse.jgit.revwalk,
    org.eclipse.jgit.diff,
    org.eclipse.jgit.dircache,
    org.eclipse.jgit.api",
- org.eclipse.jgit.nls;version="4.5.1",
- org.eclipse.jgit.notes;version="4.5.1";
+ org.eclipse.jgit.nls;version="4.6.0",
+ org.eclipse.jgit.notes;version="4.6.0";
   uses:="org.eclipse.jgit.lib,
    org.eclipse.jgit.treewalk,
    org.eclipse.jgit.revwalk,
    org.eclipse.jgit.merge",
- org.eclipse.jgit.patch;version="4.5.1";uses:="org.eclipse.jgit.lib,org.eclipse.jgit.diff",
- org.eclipse.jgit.revplot;version="4.5.1";uses:="org.eclipse.jgit.lib,org.eclipse.jgit.revwalk",
- org.eclipse.jgit.revwalk;version="4.5.1";
+ org.eclipse.jgit.patch;version="4.6.0";uses:="org.eclipse.jgit.lib,org.eclipse.jgit.diff",
+ org.eclipse.jgit.revplot;version="4.6.0";uses:="org.eclipse.jgit.lib,org.eclipse.jgit.revwalk",
+ org.eclipse.jgit.revwalk;version="4.6.0";
   uses:="org.eclipse.jgit.lib,
    org.eclipse.jgit.treewalk,
    org.eclipse.jgit.treewalk.filter,
    org.eclipse.jgit.diff,
    org.eclipse.jgit.revwalk.filter",
- org.eclipse.jgit.revwalk.filter;version="4.5.1";uses:="org.eclipse.jgit.revwalk,org.eclipse.jgit.lib,org.eclipse.jgit.util",
- org.eclipse.jgit.storage.file;version="4.5.1";uses:="org.eclipse.jgit.lib,org.eclipse.jgit.util",
- org.eclipse.jgit.storage.pack;version="4.5.1";uses:="org.eclipse.jgit.lib",
- org.eclipse.jgit.submodule;version="4.5.1";uses:="org.eclipse.jgit.lib,org.eclipse.jgit.treewalk.filter,org.eclipse.jgit.treewalk",
- org.eclipse.jgit.transport;version="4.5.1";
+ org.eclipse.jgit.revwalk.filter;version="4.6.0";uses:="org.eclipse.jgit.revwalk,org.eclipse.jgit.lib,org.eclipse.jgit.util",
+ org.eclipse.jgit.storage.file;version="4.6.0";uses:="org.eclipse.jgit.lib,org.eclipse.jgit.util",
+ org.eclipse.jgit.storage.pack;version="4.6.0";uses:="org.eclipse.jgit.lib",
+ org.eclipse.jgit.submodule;version="4.6.0";uses:="org.eclipse.jgit.lib,org.eclipse.jgit.treewalk.filter,org.eclipse.jgit.treewalk",
+ org.eclipse.jgit.transport;version="4.6.0";
   uses:="org.eclipse.jgit.transport.resolver,
    org.eclipse.jgit.revwalk,
    org.eclipse.jgit.internal.storage.pack,
@@ -121,23 +121,23 @@
    org.eclipse.jgit.transport.http,
    org.eclipse.jgit.errors,
    org.eclipse.jgit.storage.pack",
- org.eclipse.jgit.transport.http;version="4.5.1";uses:="javax.net.ssl",
- org.eclipse.jgit.transport.resolver;version="4.5.1";uses:="org.eclipse.jgit.lib,org.eclipse.jgit.transport",
- org.eclipse.jgit.treewalk;version="4.5.1";
+ org.eclipse.jgit.transport.http;version="4.6.0";uses:="javax.net.ssl",
+ org.eclipse.jgit.transport.resolver;version="4.6.0";uses:="org.eclipse.jgit.lib,org.eclipse.jgit.transport",
+ org.eclipse.jgit.treewalk;version="4.6.0";
   uses:="org.eclipse.jgit.lib,
    org.eclipse.jgit.revwalk,
    org.eclipse.jgit.attributes,
    org.eclipse.jgit.treewalk.filter,
    org.eclipse.jgit.util,
    org.eclipse.jgit.dircache",
- org.eclipse.jgit.treewalk.filter;version="4.5.1";uses:="org.eclipse.jgit.treewalk",
- org.eclipse.jgit.util;version="4.5.1";
+ org.eclipse.jgit.treewalk.filter;version="4.6.0";uses:="org.eclipse.jgit.treewalk",
+ org.eclipse.jgit.util;version="4.6.0";
   uses:="org.eclipse.jgit.lib,
    org.eclipse.jgit.transport.http,
    org.eclipse.jgit.storage.file,
    org.ietf.jgss",
- org.eclipse.jgit.util.io;version="4.5.1"
-Bundle-RequiredExecutionEnvironment: JavaSE-1.7
+ org.eclipse.jgit.util.io;version="4.6.0"
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Import-Package: com.googlecode.javaewah;version="[0.7.9,0.8.0)",
  com.jcraft.jsch;version="[0.1.37,0.2.0)",
  javax.crypto,

diff --git a/org.eclipse.jgit/META-INF/SOURCE-MANIFEST.MF b/org.eclipse.jgit/META-INF/SOURCE-MANIFEST.MF
index 7c9b6f6..6ff4c5f 100644
--- a/org.eclipse.jgit/META-INF/SOURCE-MANIFEST.MF
+++ b/org.eclipse.jgit/META-INF/SOURCE-MANIFEST.MF

@@ -3,5 +3,5 @@
 Bundle-Name: org.eclipse.jgit - Sources
 Bundle-SymbolicName: org.eclipse.jgit.source
 Bundle-Vendor: Eclipse.org - JGit
-Bundle-Version: 4.5.1.qualifier
-Eclipse-SourceBundle: org.eclipse.jgit;version="4.5.1.qualifier";roots="."
+Bundle-Version: 4.6.0.qualifier
+Eclipse-SourceBundle: org.eclipse.jgit;version="4.6.0.qualifier";roots="."

diff --git a/org.eclipse.jgit/pom.xml b/org.eclipse.jgit/pom.xml
index 58b6ef2..86f3e1f 100644
--- a/org.eclipse.jgit/pom.xml
+++ b/org.eclipse.jgit/pom.xml

@@ -53,7 +53,7 @@
   <parent>
     <groupId>org.eclipse.jgit</groupId>
     <artifactId>org.eclipse.jgit-parent</artifactId>
-    <version>4.5.1-SNAPSHOT</version>
+    <version>4.6.0-SNAPSHOT</version>
   </parent>
 
   <artifactId>org.eclipse.jgit</artifactId>

diff --git a/org.eclipse.jgit/resources/org/eclipse/jgit/internal/JGitText.properties b/org.eclipse.jgit/resources/org/eclipse/jgit/internal/JGitText.properties
index 327ca0a..2c721ea 100644
--- a/org.eclipse.jgit/resources/org/eclipse/jgit/internal/JGitText.properties
+++ b/org.eclipse.jgit/resources/org/eclipse/jgit/internal/JGitText.properties

@@ -279,6 +279,7 @@
 expectedPktLineWithService=expected pkt-line with ''# service=-'', got ''{0}''
 expectedReceivedContentType=expected Content-Type {0}; received Content-Type {1}
 expectedReportForRefNotReceived={0}: expected report for ref {1} not received
+failedToDetermineFilterDefinition=An exception occured while determining filter definitions
 failedUpdatingRefs=failed updating refs
 failureDueToOneOfTheFollowing=Failure due to one of the following:
 failureUpdatingFETCH_HEAD=Failure updating FETCH_HEAD: {0}

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/api/AddCommand.java b/org.eclipse.jgit/src/org/eclipse/jgit/api/AddCommand.java
index 1f37833..16ec146 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/api/AddCommand.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/api/AddCommand.java

@@ -224,6 +224,11 @@ public DirCache call() throws GitAPIException, NoFilepatternException {
 					entry.setLength(f.getEntryLength());
 					entry.setLastModified(f.getEntryLastModified());
 					long len = f.getEntryContentLength();
+					// We read and filter the content multiple times.
+					// f.getEntryContentLength() reads and filters the input and
+					// inserter.insert(...) does it again. That's because an
+					// ObjectInserter needs to know the length before it starts
+					// inserting. TODO: Fix this by using Buffers.
 					try (InputStream in = f.openEntryStream()) {
 						ObjectId id = inserter.insert(OBJ_BLOB, len, in);
 						entry.setObjectId(id);

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/api/CheckoutCommand.java b/org.eclipse.jgit/src/org/eclipse/jgit/api/CheckoutCommand.java
index 65508ef..20d0704 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/api/CheckoutCommand.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/api/CheckoutCommand.java

@@ -318,7 +318,9 @@ else if (orphan) {
 
 			if (!dco.getToBeDeleted().isEmpty()) {
 				status = new CheckoutResult(Status.NONDELETED,
-						dco.getToBeDeleted());
+						dco.getToBeDeleted(),
+						new ArrayList<String>(dco.getUpdated().keySet()),
+						dco.getRemoved());
 			} else
 				status = new CheckoutResult(new ArrayList<String>(dco
 						.getUpdated().keySet()), dco.getRemoved());

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/api/CheckoutResult.java b/org.eclipse.jgit/src/org/eclipse/jgit/api/CheckoutResult.java
index 6a1bfb8..92a67f4 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/api/CheckoutResult.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/api/CheckoutResult.java

@@ -113,6 +113,28 @@ public enum Status {
 	 *            {@link Status#CONFLICTS} or {@link Status#NONDELETED}.
 	 */
 	CheckoutResult(Status status, List<String> fileList) {
+		this(status, fileList, null, null);
+	}
+
+	/**
+	 * Create a new fail result. If status is {@link Status#CONFLICTS},
+	 * <code>fileList</code> is a list of conflicting files, if status is
+	 * {@link Status#NONDELETED}, <code>fileList</code> is a list of not deleted
+	 * files. All other values ignore <code>fileList</code>. To create a result
+	 * for {@link Status#OK}, see {@link #CheckoutResult(List, List)}.
+	 *
+	 * @param status
+	 *            the failure status
+	 * @param fileList
+	 *            the list of files to store, status has to be either
+	 *            {@link Status#CONFLICTS} or {@link Status#NONDELETED}.
+	 * @param modified
+	 *            the modified files
+	 * @param removed
+	 *            the removed files.
+	 */
+	CheckoutResult(Status status, List<String> fileList, List<String> modified,
+			List<String> removed) {
 		myStatus = status;
 		if (status == Status.CONFLICTS)
 			this.conflictList = fileList;
@@ -123,8 +145,8 @@ public enum Status {
 		else
 			this.undeletedList = new ArrayList<String>(0);
 
-		this.modifiedList = new ArrayList<String>(0);
-		this.removedList = new ArrayList<String>(0);
+		this.modifiedList = modified;
+		this.removedList = removed;
 	}
 
 	/**

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/attributes/FilterCommand.java b/org.eclipse.jgit/src/org/eclipse/jgit/attributes/FilterCommand.java
new file mode 100644
index 0000000..10be588
--- /dev/null
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/attributes/FilterCommand.java

@@ -0,0 +1,94 @@
+/*
+ * Copyright (C) 2016, Christian Halstrick <christian.halstrick@sap.com>
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.attributes;
+
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.OutputStream;
+
+/**
+ * An abstraction for JGit's builtin implementations for hooks and filters.
+ * Instead of spawning an external processes to start a filter/hook and to pump
+ * data from/to stdin/stdout these builtin commmands may be used. They are
+ * constructed by {@link FilterCommandFactory}.
+ *
+ * @since 4.6
+ */
+public abstract class FilterCommand {
+	/**
+	 * The {@link InputStream} this command should read from
+	 */
+	protected InputStream in;
+
+	/**
+	 * The {@link OutputStream} this command should write to
+	 */
+	protected OutputStream out;
+
+	/**
+	 * @param in
+	 *            The {@link InputStream} this command should read from
+	 * @param out
+	 *            The {@link OutputStream} this command should write to
+	 */
+	public FilterCommand(InputStream in, OutputStream out) {
+		this.in = in;
+		this.out = out;
+	}
+
+	/**
+	 * Execute the command. The command is supposed to read data from
+	 * {@link #in} and to write the result to {@link #out}. It returns the
+	 * number of bytes it read from {@link #in}. It should be called in a loop
+	 * until it returns -1 signaling that the {@link InputStream} is completely
+	 * processed.
+	 *
+	 * @return the number of bytes read from the {@link InputStream} or -1. -1
+	 *         means that the {@link InputStream} is completely processed.
+	 * @throws IOException
+	 *             when {@link IOException} occured while reading from
+	 *             {@link #in} or writing to {@link #out}
+	 *
+	 */
+	public abstract int run() throws IOException;
+}

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/attributes/FilterCommandFactory.java b/org.eclipse.jgit/src/org/eclipse/jgit/attributes/FilterCommandFactory.java
new file mode 100644
index 0000000..6b973da
--- /dev/null
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/attributes/FilterCommandFactory.java

@@ -0,0 +1,73 @@
+/*
+ * Copyright (C) 2016, Christian Halstrick <christian.halstrick@sap.com>
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.attributes;
+
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.OutputStream;
+
+import org.eclipse.jgit.lib.Repository;
+
+/**
+ * The factory responsible for creating instances of {@link FilterCommand}.
+ *
+ * @since 4.6
+ */
+public interface FilterCommandFactory {
+	/**
+	 * Create a new {@link FilterCommand}.
+	 *
+	 * @param db
+	 *            the repository this command should work on
+	 * @param in
+	 *            the {@link InputStream} this command should read from
+	 * @param out
+	 *            the {@link OutputStream} this command should write to
+	 * @return the created {@link FilterCommand}
+	 * @throws IOException
+	 *             thrown when the command constructor throws an IOException
+	 */
+	public FilterCommand create(Repository db, InputStream in,
+			OutputStream out) throws IOException;
+
+}

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/attributes/FilterCommandRegistry.java b/org.eclipse.jgit/src/org/eclipse/jgit/attributes/FilterCommandRegistry.java
new file mode 100644
index 0000000..3fbaedb
--- /dev/null
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/attributes/FilterCommandRegistry.java

@@ -0,0 +1,140 @@
+/*
+ * Copyright (C) 2016, Matthias Sohn <matthias.sohn@sap.com>
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.attributes;
+
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.OutputStream;
+import java.util.Set;
+import java.util.concurrent.ConcurrentHashMap;
+
+import org.eclipse.jgit.lib.Repository;
+
+/**
+ * Registry for built-in filters
+ *
+ * @since 4.6
+ */
+public class FilterCommandRegistry {
+	private static ConcurrentHashMap<String, FilterCommandFactory> filterCommandRegistry = new ConcurrentHashMap<>();
+
+	/**
+	 * Registers a {@link FilterCommandFactory} responsible for creating
+	 * {@link FilterCommand}s for a certain command name. If the factory f1 is
+	 * registered for the name "jgit://builtin/x" then a call to
+	 * <code>getCommand("jgit://builtin/x", ...)</code> will call
+	 * <code>f1(...)</code> to create a new instance of {@link FilterCommand}
+	 *
+	 * @param filterCommandName
+	 *            the command name for which this factory is registered
+	 * @param factory
+	 *            the factory responsible for creating {@link FilterCommand}s
+	 *            for the specified name
+	 * @return the previous factory associated with <tt>commandName</tt>, or
+	 *         <tt>null</tt> if there was no mapping for <tt>commandName</tt>
+	 */
+	public static FilterCommandFactory register(String filterCommandName,
+			FilterCommandFactory factory) {
+		return filterCommandRegistry.put(filterCommandName, factory);
+	}
+
+	/**
+	 * Unregisters the {@link FilterCommandFactory} registered for the given
+	 * command name
+	 *
+	 * @param filterCommandName
+	 *            the FilterCommandFactory's filter command name
+	 * @return the previous factory associated with <tt>filterCommandName</tt>,
+	 *         or <tt>null</tt> if there was no mapping for <tt>commandName</tt>
+	 */
+	public static FilterCommandFactory unregister(String filterCommandName) {
+		return filterCommandRegistry.remove(filterCommandName);
+	}
+
+	/**
+	 * Checks whether any {@link FilterCommandFactory} is registered for a given
+	 * command name
+	 *
+	 * @param filterCommandName
+	 *            the name for which the registry should be checked
+	 * @return <code>true</code> if any factory was registered for the name
+	 */
+	public static boolean isRegistered(String filterCommandName) {
+		return filterCommandRegistry.containsKey(filterCommandName);
+	}
+
+	/**
+	 * @return Set of commandNames for which a {@link FilterCommandFactory} is
+	 *         registered
+	 */
+	public static Set<String> getRegisteredFilterCommands() {
+		return filterCommandRegistry.keySet();
+	}
+
+	/**
+	 * Creates a new {@link FilterCommand} for the given name. A factory must be
+	 * registered for the name in advance.
+	 *
+	 * @param filterCommandName
+	 *            The name for which a new {@link FilterCommand} should be
+	 *            created
+	 * @param db
+	 *            the repository this command should work on
+	 * @param in
+	 *            the {@link InputStream} this {@link FilterCommand} should read
+	 *            from
+	 * @param out
+	 *            the {@link OutputStream} this {@link FilterCommand} should
+	 *            write to
+	 * @return the command if a command could be created or <code>null</code> if
+	 *         there was no factory registered for that name
+	 * @throws IOException
+	 */
+	public static FilterCommand createFilterCommand(String filterCommandName,
+			Repository db, InputStream in, OutputStream out)
+			throws IOException {
+		FilterCommandFactory cf = filterCommandRegistry.get(filterCommandName);
+		return (cf == null) ? null : cf.create(db, in, out);
+	}
+
+}

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/dircache/DirCacheCheckout.java b/org.eclipse.jgit/src/org/eclipse/jgit/dircache/DirCacheCheckout.java
index 8af7e46..c318443 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/dircache/DirCacheCheckout.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/dircache/DirCacheCheckout.java

@@ -54,6 +54,8 @@
 import java.util.Map;
 
 import org.eclipse.jgit.api.errors.FilterFailedException;
+import org.eclipse.jgit.attributes.FilterCommand;
+import org.eclipse.jgit.attributes.FilterCommandRegistry;
 import org.eclipse.jgit.errors.CheckoutConflictException;
 import org.eclipse.jgit.errors.CorruptObjectException;
 import org.eclipse.jgit.errors.IncorrectObjectTypeException;
@@ -86,11 +88,15 @@
 import org.eclipse.jgit.util.RawParseUtils;
 import org.eclipse.jgit.util.SystemReader;
 import org.eclipse.jgit.util.io.EolStreamTypeUtil;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
 /**
  * This class handles checking out one or two trees merging with the index.
  */
 public class DirCacheCheckout {
+	private static Logger LOG = LoggerFactory.getLogger(DirCacheCheckout.class);
+
 	private static final int MAX_EXCEPTION_TEXT_SIZE = 10 * 1024;
 
 	/**
@@ -1303,45 +1309,19 @@ public static void checkoutEntry(Repository repo, DirCacheEntry entry,
 		} else {
 			nonNullEolStreamType = EolStreamType.DIRECT;
 		}
-		OutputStream channel = EolStreamTypeUtil.wrapOutputStream(
-				new FileOutputStream(tmpFile), nonNullEolStreamType);
-		if (checkoutMetadata.smudgeFilterCommand != null) {
-			ProcessBuilder filterProcessBuilder = fs.runInShell(
-					checkoutMetadata.smudgeFilterCommand, new String[0]);
-			filterProcessBuilder.directory(repo.getWorkTree());
-			filterProcessBuilder.environment().put(Constants.GIT_DIR_KEY,
-					repo.getDirectory().getAbsolutePath());
-			ExecutionResult result;
-			int rc;
-			try {
-				// TODO: wire correctly with AUTOCRLF
-				result = fs.execute(filterProcessBuilder, ol.openStream());
-				rc = result.getRc();
-				if (rc == 0) {
-					result.getStdout().writeTo(channel,
-							NullProgressMonitor.INSTANCE);
+		try (OutputStream channel = EolStreamTypeUtil.wrapOutputStream(
+				new FileOutputStream(tmpFile), nonNullEolStreamType)) {
+			if (checkoutMetadata.smudgeFilterCommand != null) {
+				if (FilterCommandRegistry
+						.isRegistered(checkoutMetadata.smudgeFilterCommand)) {
+					runBuiltinFilterCommand(repo, checkoutMetadata, ol,
+							channel);
+				} else {
+					runExternalFilterCommand(repo, entry, checkoutMetadata, ol,
+							fs, channel);
 				}
-			} catch (IOException | InterruptedException e) {
-				throw new IOException(new FilterFailedException(e,
-						checkoutMetadata.smudgeFilterCommand,
-						entry.getPathString()));
-
-			} finally {
-				channel.close();
-			}
-			if (rc != 0) {
-				throw new IOException(new FilterFailedException(rc,
-						checkoutMetadata.smudgeFilterCommand,
-						entry.getPathString(),
-						result.getStdout().toByteArray(MAX_EXCEPTION_TEXT_SIZE),
-						RawParseUtils.decode(result.getStderr()
-								.toByteArray(MAX_EXCEPTION_TEXT_SIZE))));
-			}
-		} else {
-			try {
+			} else {
 				ol.copyTo(channel);
-			} finally {
-				channel.close();
 			}
 		}
 		// The entry needs to correspond to the on-disk filesize. If the content
@@ -1382,6 +1362,63 @@ public static void checkoutEntry(Repository repo, DirCacheEntry entry,
 		entry.setLastModified(fs.lastModified(f));
 	}
 
+	// Run an external filter command
+	private static void runExternalFilterCommand(Repository repo,
+			DirCacheEntry entry,
+			CheckoutMetadata checkoutMetadata, ObjectLoader ol, FS fs,
+			OutputStream channel) throws IOException {
+		ProcessBuilder filterProcessBuilder = fs.runInShell(
+				checkoutMetadata.smudgeFilterCommand, new String[0]);
+		filterProcessBuilder.directory(repo.getWorkTree());
+		filterProcessBuilder.environment().put(Constants.GIT_DIR_KEY,
+				repo.getDirectory().getAbsolutePath());
+		ExecutionResult result;
+		int rc;
+		try {
+			// TODO: wire correctly with AUTOCRLF
+			result = fs.execute(filterProcessBuilder, ol.openStream());
+			rc = result.getRc();
+			if (rc == 0) {
+				result.getStdout().writeTo(channel,
+						NullProgressMonitor.INSTANCE);
+			}
+		} catch (IOException | InterruptedException e) {
+			throw new IOException(new FilterFailedException(e,
+					checkoutMetadata.smudgeFilterCommand,
+					entry.getPathString()));
+		}
+		if (rc != 0) {
+			throw new IOException(new FilterFailedException(rc,
+					checkoutMetadata.smudgeFilterCommand,
+					entry.getPathString(),
+					result.getStdout().toByteArray(MAX_EXCEPTION_TEXT_SIZE),
+					RawParseUtils.decode(result.getStderr()
+							.toByteArray(MAX_EXCEPTION_TEXT_SIZE))));
+		}
+	}
+
+	// Run a builtin filter command
+	private static void runBuiltinFilterCommand(Repository repo,
+			CheckoutMetadata checkoutMetadata, ObjectLoader ol,
+			OutputStream channel) throws MissingObjectException, IOException {
+		FilterCommand command = null;
+		try {
+			command = FilterCommandRegistry.createFilterCommand(
+					checkoutMetadata.smudgeFilterCommand, repo, ol.openStream(),
+					channel);
+		} catch (IOException e) {
+			LOG.error(JGitText.get().failedToDetermineFilterDefinition, e);
+			// In case an IOException occurred during creating of the command
+			// then proceed as if there would not have been a builtin filter.
+			ol.copyTo(channel);
+		}
+		if (command != null) {
+			while (command.run() != -1) {
+				// loop as long as command.run() tells there is work to do
+			}
+		}
+	}
+
 	@SuppressWarnings("deprecation")
 	private static void checkValidPath(CanonicalTreeParser t)
 			throws InvalidPathException {

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/internal/JGitText.java b/org.eclipse.jgit/src/org/eclipse/jgit/internal/JGitText.java
index 758f71d..956171b 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/internal/JGitText.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/internal/JGitText.java

@@ -338,6 +338,7 @@ public static JGitText get() {
 	/***/ public String expectedPktLineWithService;
 	/***/ public String expectedReceivedContentType;
 	/***/ public String expectedReportForRefNotReceived;
+	/***/ public String failedToDetermineFilterDefinition;
 	/***/ public String failedUpdatingRefs;
 	/***/ public String failureDueToOneOfTheFollowing;
 	/***/ public String failureUpdatingFETCH_HEAD;

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/dfs/DfsBlockCache.java b/org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/dfs/DfsBlockCache.java
index ecd4b23..2c89535 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/dfs/DfsBlockCache.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/dfs/DfsBlockCache.java

@@ -175,6 +175,7 @@ public static DfsBlockCache getInstance() {
 	/** Number of bytes currently loaded in the cache. */
 	private volatile long liveBytes;
 
+	@SuppressWarnings("unchecked")
 	private DfsBlockCache(final DfsBlockCacheConfig cfg) {
 		tableSize = tableSize(cfg);
 		if (tableSize < 1)
@@ -416,6 +417,7 @@ private void creditSpace(int credit) {
 		clockLock.unlock();
 	}
 
+	@SuppressWarnings("unchecked")
 	private void addToClock(Ref ref, int credit) {
 		clockLock.lock();
 		try {

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/lib/Constants.java b/org.eclipse.jgit/src/org/eclipse/jgit/lib/Constants.java
index d30edaf..f9350a5 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/lib/Constants.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/lib/Constants.java

@@ -391,6 +391,20 @@ public final class Constants {
 	 */
 	public static final String ATTR_FILTER_TYPE_SMUDGE = "smudge";
 
+	/**
+	 * Whether to use JGit's implementations of filters and hooks
+	 *
+	 * @since 4.6
+	 */
+	public static final String ATTR_FILTER_USE_BUILTIN = "useJGitBuiltin";
+
+	/**
+	 * Builtin filter commands start with this prefix
+	 *
+	 * @since 4.6
+	 */
+	public static final String BUILTIN_FILTER_PREFIX = "jgit://builtin/";
+
 	/** Name of the ignore file */
 	public static final String DOT_GIT_IGNORE = ".gitignore";
 

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/lib/Repository.java b/org.eclipse.jgit/src/org/eclipse/jgit/lib/Repository.java
index aba5242..e9ff504 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/lib/Repository.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/lib/Repository.java

@@ -1183,15 +1183,6 @@ public void onIndexChanged(IndexChangedEvent event) {
 		return DirCache.lock(this, l);
 	}
 
-	static byte[] gitInternalSlash(byte[] bytes) {
-		if (File.separatorChar == '/')
-			return bytes;
-		for (int i=0; i<bytes.length; ++i)
-			if (bytes[i] == File.separatorChar)
-				bytes[i] = '/';
-		return bytes;
-	}
-
 	/**
 	 * @return an important state
 	 */

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/lib/RepositoryCache.java b/org.eclipse.jgit/src/org/eclipse/jgit/lib/RepositoryCache.java
index 2e0ed16..e5a0553 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/lib/RepositoryCache.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/lib/RepositoryCache.java

@@ -150,7 +150,7 @@ public static void register(final Repository db) {
 	public static void close(@NonNull final Repository db) {
 		if (db.getDirectory() != null) {
 			FileKey key = FileKey.exact(db.getDirectory(), db.getFS());
-			cache.unregisterAndCloseRepository(key, db);
+			cache.unregisterAndCloseRepository(key);
 		}
 	}
 
@@ -302,8 +302,7 @@ private boolean isExpired(Repository db) {
 			&& (System.currentTimeMillis() - db.closedAt.get() > expireAfter);
 	}
 
-	private void unregisterAndCloseRepository(final Key location,
-			Repository db) {
+	private void unregisterAndCloseRepository(final Key location) {
 		synchronized (lockFor(location)) {
 			Repository oldDb = unregisterRepository(location);
 			if (oldDb != null) {

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/transport/BaseReceivePack.java b/org.eclipse.jgit/src/org/eclipse/jgit/transport/BaseReceivePack.java
index 0724eac..4d0803a 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/transport/BaseReceivePack.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/transport/BaseReceivePack.java

@@ -69,6 +69,7 @@
 import java.util.Set;
 import java.util.concurrent.TimeUnit;
 
+import org.eclipse.jgit.annotations.Nullable;
 import org.eclipse.jgit.errors.InvalidObjectIdException;
 import org.eclipse.jgit.errors.MissingObjectException;
 import org.eclipse.jgit.errors.PackProtocolException;
@@ -268,6 +269,7 @@ public Set<String> getCapabilities() {
 	private PushCertificateParser pushCertificateParser;
 	private SignedPushConfig signedPushConfig;
 	private PushCertificate pushCert;
+	private ReceivedPackStatistics stats;
 
 	/**
 	 * Get the push certificate used to verify the pusher's identity.
@@ -1115,6 +1117,18 @@ public void sendAdvertisedRefs(final RefAdvertiser adv)
 	}
 
 	/**
+	 * Returns the statistics on the received pack if available. This should be
+	 * called after {@link #receivePack} is called.
+	 *
+	 * @return ReceivedPackStatistics
+	 * @since 4.6
+	 */
+	@Nullable
+	public ReceivedPackStatistics getReceivedPackStatistics() {
+		return stats;
+	}
+
+	/**
 	 * Receive a list of commands from the input.
 	 *
 	 * @throws IOException
@@ -1307,6 +1321,7 @@ private void receivePack() throws IOException {
 			parser.setMaxObjectSizeLimit(maxObjectSizeLimit);
 			packLock = parser.parse(receiving, resolving);
 			packSize = Long.valueOf(parser.getPackSize());
+			stats = parser.getReceivedPackStatistics();
 			ins.flush();
 		}
 

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/transport/PackParser.java b/org.eclipse.jgit/src/org/eclipse/jgit/transport/PackParser.java
index b96fe88..4bbe3f8 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/transport/PackParser.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/transport/PackParser.java

@@ -186,6 +186,9 @@ public static enum Source {
 	/** Git object size limit */
 	private long maxObjectSizeLimit;
 
+	private final ReceivedPackStatistics.Builder stats =
+			new ReceivedPackStatistics.Builder();
+
 	/**
 	 * Initialize a pack parser.
 	 *
@@ -455,8 +458,8 @@ public List<PackedObjectInfo> getSortedObjectList(
 	}
 
 	/**
-	 * Get the size of the parsed pack.
-	 *
+	 * Get the size of the newly created pack.
+	 * <p>
 	 * This will also include the pack index size if an index was created. This
 	 * method should only be called after pack parsing is finished.
 	 *
@@ -469,6 +472,18 @@ public long getPackSize() {
 	}
 
 	/**
+	 * Returns the statistics of the parsed pack.
+	 * <p>
+	 * This should only be called after pack parsing is finished.
+	 *
+	 * @return {@link ReceivedPackStatistics}
+	 * @since 4.6
+	 */
+	public ReceivedPackStatistics getReceivedPackStatistics() {
+		return stats.build();
+	}
+
+	/**
 	 * Parse the pack stream.
 	 *
 	 * @param progress
@@ -626,6 +641,7 @@ private void resolveDeltas(final PackedObjectInfo oe,
 	private void resolveDeltas(DeltaVisit visit, final int type,
 			ObjectTypeAndSize info, ProgressMonitor progress)
 			throws IOException {
+		stats.addDeltaObject(type);
 		do {
 			progress.update(1);
 			info = openDatabase(visit.delta, info);
@@ -919,6 +935,7 @@ private void readPackFooter() throws IOException {
 
 	// Cleanup all resources associated with our input parsing.
 	private void endInput() {
+		stats.setNumBytesRead(streamPosition());
 		in = null;
 	}
 
@@ -947,12 +964,14 @@ private void indexOneObject() throws IOException {
 		case Constants.OBJ_TREE:
 		case Constants.OBJ_BLOB:
 		case Constants.OBJ_TAG:
+			stats.addWholeObject(typeCode);
 			onBeginWholeObject(streamPosition, typeCode, sz);
 			onObjectHeader(Source.INPUT, hdrBuf, 0, hdrPtr);
 			whole(streamPosition, typeCode, sz);
 			break;
 
 		case Constants.OBJ_OFS_DELTA: {
+			stats.addOffsetDelta();
 			c = readFrom(Source.INPUT);
 			hdrBuf[hdrPtr++] = (byte) c;
 			long ofs = c & 127;
@@ -975,6 +994,7 @@ private void indexOneObject() throws IOException {
 		}
 
 		case Constants.OBJ_REF_DELTA: {
+			stats.addRefDelta();
 			c = fill(Source.INPUT, 20);
 			final ObjectId base = ObjectId.fromRaw(buf, c);
 			System.arraycopy(buf, c, hdrBuf, hdrPtr, 20);

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/transport/ReceivedPackStatistics.java b/org.eclipse.jgit/src/org/eclipse/jgit/transport/ReceivedPackStatistics.java
new file mode 100644
index 0000000..052d550
--- /dev/null
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/transport/ReceivedPackStatistics.java

@@ -0,0 +1,231 @@
+/*
+ * Copyright (C) 2016, Google Inc.
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+
+package org.eclipse.jgit.transport;
+
+import org.eclipse.jgit.lib.Constants;
+
+/**
+ * Statistics about {@link PackParser}.
+ *
+ * @since 4.6
+ */
+public class ReceivedPackStatistics {
+	private long numBytesRead;
+
+	private long numWholeCommit;
+	private long numWholeTree;
+	private long numWholeBlob;
+	private long numWholeTag;
+	private long numOfsDelta;
+	private long numRefDelta;
+
+	private long numDeltaCommit;
+	private long numDeltaTree;
+	private long numDeltaBlob;
+	private long numDeltaTag;
+
+	/** @return number of bytes read from the input stream */
+	public long getNumBytesRead() {
+		return numBytesRead;
+	}
+
+	/** @return number of whole commit objects in the pack */
+	public long getNumWholeCommit() {
+		return numWholeCommit;
+	}
+
+	/** @return number of whole tree objects in the pack */
+	public long getNumWholeTree() {
+		return numWholeTree;
+	}
+
+	/** @return number of whole blob objects in the pack */
+	public long getNumWholeBlob() {
+		return numWholeBlob;
+	}
+
+	/** @return number of whole tag objects in the pack */
+	public long getNumWholeTag() {
+		return numWholeTag;
+	}
+
+	/** @return number of offset delta objects in the pack */
+	public long getNumOfsDelta() {
+		return numOfsDelta;
+	}
+
+	/** @return number of ref delta objects in the pack */
+	public long getNumRefDelta() {
+		return numRefDelta;
+	}
+
+	/** @return number of delta commit objects in the pack */
+	public long getNumDeltaCommit() {
+		return numDeltaCommit;
+	}
+
+	/** @return number of delta tree objects in the pack */
+	public long getNumDeltaTree() {
+		return numDeltaTree;
+	}
+
+	/** @return number of delta blob objects in the pack */
+	public long getNumDeltaBlob() {
+		return numDeltaBlob;
+	}
+
+	/** @return number of delta tag objects in the pack */
+	public long getNumDeltaTag() {
+		return numDeltaTag;
+	}
+
+	/** A builder for {@link ReceivedPackStatistics}. */
+	public static class Builder {
+		private long numBytesRead;
+
+		private long numWholeCommit;
+		private long numWholeTree;
+		private long numWholeBlob;
+		private long numWholeTag;
+		private long numOfsDelta;
+		private long numRefDelta;
+
+		private long numDeltaCommit;
+		private long numDeltaTree;
+		private long numDeltaBlob;
+		private long numDeltaTag;
+
+		/**
+		 * @param numBytesRead number of bytes read from the input stream
+		 * @return this
+		 */
+		public Builder setNumBytesRead(long numBytesRead) {
+			this.numBytesRead = numBytesRead;
+			return this;
+		}
+
+		/**
+		 * Increment a whole object count.
+		 *
+		 * @param type OBJ_COMMIT, OBJ_TREE, OBJ_BLOB, or OBJ_TAG
+		 * @return this
+		 */
+		public Builder addWholeObject(int type) {
+			switch (type) {
+				case Constants.OBJ_COMMIT:
+					numWholeCommit++;
+					break;
+				case Constants.OBJ_TREE:
+					numWholeTree++;
+					break;
+				case Constants.OBJ_BLOB:
+					numWholeBlob++;
+					break;
+				case Constants.OBJ_TAG:
+					numWholeTag++;
+					break;
+				default:
+					throw new IllegalArgumentException(
+							type + " cannot be a whole object"); //$NON-NLS-1$
+			}
+			return this;
+		}
+
+		/** @return this */
+		public Builder addOffsetDelta() {
+			numOfsDelta++;
+			return this;
+		}
+
+		/** @return this */
+		public Builder addRefDelta() {
+			numRefDelta++;
+			return this;
+		}
+
+		/**
+		 * Increment a delta object count.
+		 *
+		 * @param type OBJ_COMMIT, OBJ_TREE, OBJ_BLOB, or OBJ_TAG
+		 * @return this
+		 */
+		public Builder addDeltaObject(int type) {
+			switch (type) {
+				case Constants.OBJ_COMMIT:
+					numDeltaCommit++;
+					break;
+				case Constants.OBJ_TREE:
+					numDeltaTree++;
+					break;
+				case Constants.OBJ_BLOB:
+					numDeltaBlob++;
+					break;
+				case Constants.OBJ_TAG:
+					numDeltaTag++;
+					break;
+				default:
+					throw new IllegalArgumentException(
+							"delta should be a delta to a whole object. " + //$NON-NLS-1$
+							type + " cannot be a whole object"); //$NON-NLS-1$
+			}
+			return this;
+		}
+
+		ReceivedPackStatistics build() {
+			ReceivedPackStatistics s = new ReceivedPackStatistics();
+			s.numBytesRead = numBytesRead;
+			s.numWholeCommit = numWholeCommit;
+			s.numWholeTree = numWholeTree;
+			s.numWholeBlob = numWholeBlob;
+			s.numWholeTag = numWholeTag;
+			s.numOfsDelta = numOfsDelta;
+			s.numRefDelta = numRefDelta;
+			s.numDeltaCommit = numDeltaCommit;
+			s.numDeltaTree = numDeltaTree;
+			s.numDeltaBlob = numDeltaBlob;
+			s.numDeltaTag = numDeltaTag;
+			return s;
+		}
+	}
+}

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/transport/UploadPack.java b/org.eclipse.jgit/src/org/eclipse/jgit/transport/UploadPack.java
index d1fd67e..2ef097a 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/transport/UploadPack.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/transport/UploadPack.java

@@ -313,6 +313,7 @@ public Set<String> getOptions() {
 
 	private PackStatistics statistics;
 
+	@SuppressWarnings("deprecation")
 	private UploadPackLogger logger = UploadPackLogger.NULL;
 
 	/**
@@ -1428,6 +1429,7 @@ private boolean reportInternalServerErrorOverSideband() {
 		}
 	}
 
+	@SuppressWarnings("deprecation")
 	private void sendPack(final boolean sideband) throws IOException {
 		ProgressMonitor pm = NullProgressMonitor.INSTANCE;
 		OutputStream packOut = rawOut;

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/transport/UploadPackLogger.java b/org.eclipse.jgit/src/org/eclipse/jgit/transport/UploadPackLogger.java
index 85ebecc..0588634 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/transport/UploadPackLogger.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/transport/UploadPackLogger.java

@@ -56,7 +56,7 @@
  * @deprecated use {@link PostUploadHook} instead
  */
 @Deprecated
-public interface UploadPackLogger {
+public interface UploadPackLogger { // TODO remove in JGit 5.0
 	/** A simple no-op logger. */
 	public static final UploadPackLogger NULL = new UploadPackLogger() {
 		public void onPackStatistics(PackWriter.Statistics stats) {

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/transport/WalkFetchConnection.java b/org.eclipse.jgit/src/org/eclipse/jgit/transport/WalkFetchConnection.java
index 17edfdc..c90cadf 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/transport/WalkFetchConnection.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/transport/WalkFetchConnection.java

@@ -195,7 +195,7 @@ class WalkFetchConnection extends BaseFetchConnection {
 		local = wt.local;
 		objCheck = wt.getObjectChecker();
 		inserter = local.newObjectInserter();
-		reader = local.newObjectReader();
+		reader = inserter.newReader();
 
 		remotes = new ArrayList<WalkRemoteObjectDatabase>();
 		remotes.add(w);
@@ -240,6 +240,12 @@ protected void doFetch(final ProgressMonitor monitor,
 				downloadObject(monitor, id);
 			process(id);
 		}
+
+		try {
+			inserter.flush();
+		} catch (IOException e) {
+			throw new TransportException(e.getMessage(), e);
+		}
 	}
 
 	public Collection<PackLock> getPackLocks() {
@@ -652,7 +658,6 @@ private void verifyAndInsertLooseObject(final AnyObjectId id,
 					Constants.typeString(type),
 					Integer.valueOf(compressed.length)));
 		}
-		inserter.flush();
 	}
 
 	private Collection<WalkRemoteObjectDatabase> expandOneAlternate(
@@ -883,7 +888,6 @@ void downloadPack(final ProgressMonitor monitor) throws IOException {
 			PackLock lock = parser.parse(monitor);
 			if (lock != null)
 				packLocks.add(lock);
-			inserter.flush();
 		}
 	}
 }

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/treewalk/FileTreeIterator.java b/org.eclipse.jgit/src/org/eclipse/jgit/treewalk/FileTreeIterator.java
index db81e1a..afa2ed9 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/treewalk/FileTreeIterator.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/treewalk/FileTreeIterator.java

@@ -426,4 +426,9 @@ public File getEntryFile() {
 	protected byte[] idSubmodule(final Entry e) {
 		return idSubmodule(getDirectory(), e);
 	}
+
+	@Override
+	protected String readSymlinkTarget(Entry entry) throws IOException {
+		return fs.readSymLink(getEntryFile());
+	}
 }

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/treewalk/TreeWalk.java b/org.eclipse.jgit/src/org/eclipse/jgit/treewalk/TreeWalk.java
index 911b7ff..21cd6b8 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/treewalk/TreeWalk.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/treewalk/TreeWalk.java

@@ -55,6 +55,7 @@
 import org.eclipse.jgit.attributes.Attributes;
 import org.eclipse.jgit.attributes.AttributesNodeProvider;
 import org.eclipse.jgit.attributes.AttributesProvider;
+import org.eclipse.jgit.attributes.FilterCommandRegistry;
 import org.eclipse.jgit.dircache.DirCacheBuildIterator;
 import org.eclipse.jgit.attributes.AttributesHandler;
 import org.eclipse.jgit.dircache.DirCacheIterator;
@@ -313,6 +314,8 @@ public static TreeWalk forPath(final Repository db, final String path,
 
 	private Config config;
 
+	private Set<String> filterCommands;
+
 	/**
 	 * Create a new tree walker for a given repository.
 	 *
@@ -357,6 +360,8 @@ private TreeWalk(final @Nullable Repository repo, final ObjectReader or,
 		if (repo != null) {
 			config = repo.getConfig();
 			attributesNodeProvider = repo.createAttributesNodeProvider();
+			filterCommands = FilterCommandRegistry
+					.getRegisteredFilterCommands();
 		} else {
 			config = null;
 			attributesNodeProvider = null;
@@ -1369,8 +1374,19 @@ private String getFilterCommandDefinition(String filterDriverName,
 			return filterCommand;
 		filterCommand = config.getString(Constants.ATTR_FILTER,
 				filterDriverName, filterCommandType);
-		if (filterCommand != null)
+		boolean useBuiltin = config.getBoolean(Constants.ATTR_FILTER,
+				filterDriverName, Constants.ATTR_FILTER_USE_BUILTIN, false);
+		if (useBuiltin) {
+			String builtinFilterCommand = Constants.BUILTIN_FILTER_PREFIX
+					+ filterDriverName + '/' + filterCommandType;
+			if (filterCommands != null
+					&& filterCommands.contains(builtinFilterCommand)) {
+				filterCommand = builtinFilterCommand;
+			}
+		}
+		if (filterCommand != null) {
 			filterCommandsByNameDotType.put(key, filterCommand);
+		}
 		return filterCommand;
 	}
 }

diff --git a/org.eclipse.jgit/src/org/eclipse/jgit/treewalk/WorkingTreeIterator.java b/org.eclipse.jgit/src/org/eclipse/jgit/treewalk/WorkingTreeIterator.java
index 9a3fa80..52477cb 100644
--- a/org.eclipse.jgit/src/org/eclipse/jgit/treewalk/WorkingTreeIterator.java
+++ b/org.eclipse.jgit/src/org/eclipse/jgit/treewalk/WorkingTreeIterator.java

@@ -65,6 +65,8 @@
 import org.eclipse.jgit.api.errors.FilterFailedException;
 import org.eclipse.jgit.attributes.AttributesNode;
 import org.eclipse.jgit.attributes.AttributesRule;
+import org.eclipse.jgit.attributes.FilterCommand;
+import org.eclipse.jgit.attributes.FilterCommandRegistry;
 import org.eclipse.jgit.diff.RawText;
 import org.eclipse.jgit.dircache.DirCache;
 import org.eclipse.jgit.dircache.DirCacheEntry;
@@ -93,6 +95,8 @@
 import org.eclipse.jgit.util.IO;
 import org.eclipse.jgit.util.Paths;
 import org.eclipse.jgit.util.RawParseUtils;
+import org.eclipse.jgit.util.TemporaryBuffer;
+import org.eclipse.jgit.util.TemporaryBuffer.LocalFile;
 import org.eclipse.jgit.util.io.AutoLFInputStream;
 import org.eclipse.jgit.util.io.EolStreamTypeUtil;
 
@@ -263,7 +267,6 @@ public boolean hasId() {
 			// If there is a matching DirCacheIterator, we can reuse
 			// its idBuffer, but only if we appear to be clean against
 			// the cached index information for the path.
-			//
 			DirCacheIterator i = state.walk.getTree(state.dirCacheTree,
 							DirCacheIterator.class);
 			if (i != null) {
@@ -393,15 +396,9 @@ && getEolStreamType(opType) == EolStreamType.DIRECT) {
 
 		if (len <= MAXIMUM_FILE_SIZE_TO_READ_FULLY) {
 			ByteBuffer rawbuf = IO.readWholeStream(is, (int) len);
-			byte[] raw = rawbuf.array();
-			int n = rawbuf.limit();
-			if (!isBinary(raw, n)) {
-				rawbuf = filterClean(raw, n, opType);
-				raw = rawbuf.array();
-				n = rawbuf.limit();
-			}
-			canonLen = n;
-			return new ByteArrayInputStream(raw, 0, n);
+			rawbuf = filterClean(rawbuf.array(), rawbuf.limit(), opType);
+			canonLen = rawbuf.limit();
+			return new ByteArrayInputStream(rawbuf.array(), 0, (int) canonLen);
 		}
 
 		if (getCleanFilterCommand() == null && isBinary(e)) {
@@ -429,10 +426,6 @@ private static void safeClose(final InputStream in) {
 		}
 	}
 
-	private static boolean isBinary(byte[] content, int sz) {
-		return RawText.isBinary(content, sz);
-	}
-
 	private static boolean isBinary(Entry entry) throws IOException {
 		InputStream in = entry.openInputStream();
 		try {
@@ -461,6 +454,16 @@ private InputStream filterClean(InputStream in, OperationType opType)
 		in = handleAutoCRLF(in, opType);
 		String filterCommand = getCleanFilterCommand();
 		if (filterCommand != null) {
+			if (FilterCommandRegistry.isRegistered(filterCommand)) {
+				LocalFile buffer = new TemporaryBuffer.LocalFile(null);
+				FilterCommand command = FilterCommandRegistry
+						.createFilterCommand(filterCommand, repository, in,
+								buffer);
+				while (command.run() != -1) {
+					// loop as long as command.run() tells there is work to do
+				}
+				return buffer.openInputStream();
+			}
 			FS fs = repository.getFS();
 			ProcessBuilder filterProcessBuilder = fs.runInShell(filterCommand,
 					new String[0]);
@@ -1005,10 +1008,10 @@ private boolean contentCheck(DirCacheEntry entry, ObjectReader reader)
 
 			return false;
 		} else {
-			if (mode == FileMode.SYMLINK.getBits())
-				return !new File(readContentAsNormalizedString(current()))
-						.equals(new File((readContentAsNormalizedString(entry,
-								reader))));
+			if (mode == FileMode.SYMLINK.getBits()) {
+				return !new File(readSymlinkTarget(current())).equals(
+						new File(readContentAsNormalizedString(entry, reader)));
+			}
 			// Content differs: that's a real change, perhaps
 			if (reader == null) // deprecated use, do no further checks
 				return true;
@@ -1054,12 +1057,30 @@ private static String readContentAsNormalizedString(DirCacheEntry entry,
 		return FS.detect().normalize(RawParseUtils.decode(cachedBytes));
 	}
 
-	private static String readContentAsNormalizedString(Entry entry) throws IOException {
+	/**
+	 * Reads the target of a symlink as a string. This default implementation
+	 * fully reads the entry's input stream and converts it to a normalized
+	 * string. Subclasses may override to provide more specialized
+	 * implementations.
+	 *
+	 * @param entry
+	 *            to read
+	 * @return the entry's content as a normalized string
+	 * @throws IOException
+	 *             if the entry cannot be read or does not denote a symlink
+	 * @since 4.6
+	 */
+	protected String readSymlinkTarget(Entry entry) throws IOException {
+		if (!entry.getMode().equals(FileMode.SYMLINK)) {
+			throw new java.nio.file.NotLinkException(entry.getName());
+		}
 		long length = entry.getLength();
 		byte[] content = new byte[(int) length];
-		InputStream is = entry.openInputStream();
-		IO.readFully(is, content, 0, (int) length);
-		return FS.detect().normalize(RawParseUtils.decode(content));
+		try (InputStream is = entry.openInputStream()) {
+			int bytesRead = IO.readFully(is, content, 0);
+			return FS.detect()
+					.normalize(RawParseUtils.decode(content, 0, bytesRead));
+		}
 	}
 
 	private static long computeLength(InputStream in) throws IOException {

diff --git a/pom.xml b/pom.xml
index 3a9a6c6..d3d28e5 100644
--- a/pom.xml
+++ b/pom.xml

@@ -51,7 +51,7 @@
   <groupId>org.eclipse.jgit</groupId>
   <artifactId>org.eclipse.jgit-parent</artifactId>
   <packaging>pom</packaging>
-  <version>4.5.1-SNAPSHOT</version>
+  <version>4.6.0-SNAPSHOT</version>
 
   <name>JGit - Parent</name>
   <url>${jgit-url}</url>
@@ -190,8 +190,6 @@
     <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
     <maven.build.timestamp.format>yyyyMMddHHmm</maven.build.timestamp.format>
     <bundle-manifest>${project.build.directory}/META-INF/MANIFEST.MF</bundle-manifest>
-    <!-- set JDK_HOME to JAVA_HOME path of JDK7 installation in order to compile against JDK 7 class library -->
-    <JDK_HOME>${JAVA_HOME}</JDK_HOME>
 
     <jgit-last-release-version>4.2.0.201601211800-r</jgit-last-release-version>
     <jsch-version>0.1.53</jsch-version>
@@ -263,11 +261,8 @@
           <version>3.5.1</version>
           <configuration>
             <encoding>UTF-8</encoding>
-            <source>1.7</source>
-            <target>1.7</target>
-            <compilerArguments>
-              <bootclasspath>${JDK_HOME}${file.separator}jre${file.separator}lib${file.separator}rt.jar${path.separator}${JDK_HOME}${file.separator}jre${file.separator}lib${file.separator}jsse.jar${path.separator}${JDK_HOME}${file.separator}jre${file.separator}lib${file.separator}jce.jar</bootclasspath>
-            </compilerArguments>
+            <source>1.8</source>
+            <target>1.8</target>
           </configuration>
         </plugin>
 
@@ -346,7 +341,7 @@
           <configuration>
             <sourceEncoding>utf-8</sourceEncoding>
             <minimumTokens>100</minimumTokens>
-            <targetJdk>1.7</targetJdk>
+            <targetJdk>1.8</targetJdk>
             <format>xml</format>
             <failOnViolation>false</failOnViolation>
           </configuration>
@@ -459,7 +454,7 @@
           <quiet>true</quiet>
           <excludePackageNames>org.eclipse.jgit.http.test</excludePackageNames>
           <links>
-            <link>http://docs.oracle.com/javase/7/docs/api</link>
+            <link>http://docs.oracle.com/javase/8/docs/api</link>
           </links>
         </configuration>
         <executions>
@@ -668,12 +663,6 @@
 
   <profiles>
     <profile>
-      <id>jgit.java7</id>
-      <activation>
-        <jdk>[1.7,)</jdk>
-      </activation>
-    </profile>
-    <profile>
       <id>jgit.java8</id>
       <activation>
         <jdk>[1.8,)</jdk>

diff --git a/tools/eclipse-JGit-Format.xml b/tools/eclipse-JGit-Format.xml
index 278b449..490758a 100644
--- a/tools/eclipse-JGit-Format.xml
+++ b/tools/eclipse-JGit-Format.xml

@@ -45,7 +45,7 @@
 <setting id="org.eclipse.jdt.core.formatter.blank_lines_before_new_chunk" value="1"/>
 <setting id="org.eclipse.jdt.core.formatter.insert_space_before_binary_operator" value="insert"/>
 <setting id="org.eclipse.jdt.core.formatter.blank_lines_before_package" value="0"/>
-<setting id="org.eclipse.jdt.core.compiler.source" value="1.7"/>
+<setting id="org.eclipse.jdt.core.compiler.source" value="1.8"/>
 <setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_constructor_declaration" value="do not insert"/>
 <setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_enum_constant_arguments" value="insert"/>
 <setting id="org.eclipse.jdt.core.formatter.comment.format_line_comments" value="true"/>
@@ -156,7 +156,7 @@
 <setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_bracket_in_array_reference" value="do not insert"/>
 <setting id="org.eclipse.jdt.core.formatter.alignment_for_arguments_in_qualified_allocation_expression" value="16"/>
 <setting id="org.eclipse.jdt.core.formatter.insert_space_after_and_in_type_parameter" value="insert"/>
-<setting id="org.eclipse.jdt.core.compiler.compliance" value="1.7"/>
+<setting id="org.eclipse.jdt.core.compiler.compliance" value="1.8"/>
 <setting id="org.eclipse.jdt.core.formatter.continuation_indentation_for_array_initializer" value="2"/>
 <setting id="org.eclipse.jdt.core.formatter.insert_space_before_at_in_annotation_type_declaration" value="insert"/>
 <setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_brackets_in_array_allocation_expression" value="do not insert"/>
@@ -227,7 +227,7 @@
 <setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_constructor_declaration_throws" value="insert"/>
 <setting id="org.eclipse.jdt.core.formatter.alignment_for_parameters_in_method_declaration" value="16"/>
 <setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_brace_in_array_initializer" value="insert"/>
-<setting id="org.eclipse.jdt.core.compiler.codegen.targetPlatform" value="1.7"/>
+<setting id="org.eclipse.jdt.core.compiler.codegen.targetPlatform" value="1.8"/>
 <setting id="org.eclipse.jdt.core.formatter.use_tabs_only_for_leading_indentations" value="false"/>
 <setting id="org.eclipse.jdt.core.formatter.comment.format_header" value="false"/>
 <setting id="org.eclipse.jdt.core.formatter.insert_new_line_after_annotation_on_member" value="insert"/>