diff --git a/manifest_xml.py b/manifest_xml.py
index 6d8fca1..d67ba72 100644
--- a/manifest_xml.py
+++ b/manifest_xml.py
@@ -1039,7 +1039,8 @@
     if not path:
       path = name
     else:
-      msg = self._CheckLocalPath(path, dir_ok=True)
+      # NB: The "." project is handled specially in Project.Sync_LocalHalf.
+      msg = self._CheckLocalPath(path, dir_ok=True, cwd_dot_ok=True)
       if msg:
         raise ManifestInvalidPathError(
             '<project> invalid "path": %s: %s' % (path, msg))
@@ -1227,7 +1228,9 @@
     # our constructed logic here.  Especially since manifest authors only use
     # / in their paths.
     resep = re.compile(r'[/%s]' % re.escape(os.path.sep))
-    parts = resep.split(path)
+    # Strip off trailing slashes as those only produce '' elements, and we use
+    # parts to look for individual bad components.
+    parts = resep.split(path.rstrip('/'))
 
     # Some people use src="." to create stable links to projects.  Lets allow
     # that but reject all other uses of "." to keep things simple.
diff --git a/project.py b/project.py
index bc385f2..2567c57 100644
--- a/project.py
+++ b/project.py
@@ -1227,6 +1227,18 @@
     self.CleanPublishedCache(all_refs)
     revid = self.GetRevisionId(all_refs)
 
+    # Special case the root of the repo client checkout.  Make sure it doesn't
+    # contain files being checked out to dirs we don't allow.
+    if self.relpath == '.':
+      PROTECTED_PATHS = {'.repo'}
+      paths = set(self.work_git.ls_tree('-z', '--name-only', '--', revid).split('\0'))
+      bad_paths = paths & PROTECTED_PATHS
+      if bad_paths:
+        syncbuf.fail(self,
+                     'Refusing to checkout project that writes to protected '
+                     'paths: %s' % (', '.join(bad_paths),))
+        return
+
     def _doff():
       self._FastForward(revid)
       self._CopyAndLinkFiles()
diff --git a/tests/test_manifest_xml.py b/tests/test_manifest_xml.py
index 9060ef3..eda0696 100644
--- a/tests/test_manifest_xml.py
+++ b/tests/test_manifest_xml.py
@@ -32,6 +32,7 @@
     '..',
     '../',
     './',
+    './/',
     'foo/',
     './foo',
     '../foo',
@@ -427,6 +428,28 @@
     self.assertEqual(manifest.projects[0].objdir,
                      os.path.join(self.tempdir, '.repo/project-objects/a/path.git'))
 
+    manifest = parse('a/path', 'foo//////')
+    self.assertEqual(manifest.projects[0].gitdir,
+                     os.path.join(self.tempdir, '.repo/projects/foo.git'))
+    self.assertEqual(manifest.projects[0].objdir,
+                     os.path.join(self.tempdir, '.repo/project-objects/a/path.git'))
+
+  def test_toplevel_path(self):
+    """Check handling of path=. specially."""
+    def parse(name, path):
+      return self.getXmlManifest(f"""
+<manifest>
+  <remote name="default-remote" fetch="http://localhost" />
+  <default remote="default-remote" revision="refs/heads/main" />
+  <project name="{name}" path="{path}" />
+</manifest>
+""")
+
+    for path in ('.', './', './/', './//'):
+      manifest = parse('server/path', path)
+      self.assertEqual(manifest.projects[0].gitdir,
+                       os.path.join(self.tempdir, '.repo/projects/..git'))
+
   def test_bad_path_name_checks(self):
     """Check handling of bad path & name attributes."""
     def parse(name, path):
@@ -454,8 +477,11 @@
 
       with self.assertRaises(error.ManifestInvalidPathError):
         parse(path, 'ok')
-      with self.assertRaises(error.ManifestInvalidPathError):
-        parse('ok', path)
+
+      # We have a dedicated test for path=".".
+      if path not in {'.'}:
+        with self.assertRaises(error.ManifestInvalidPathError):
+          parse('ok', path)
 
 
 class SuperProjectElementTests(ManifestParseTestCase):